The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama35749 | INNER MEMBRANE TRANSPORTER YGJI-RELATED |
| Ama35750 | CLEAVAGE STIMULATION FACTOR SUBUNIT 1 |
| Ama35751 | NADH-UBIQUINONE OXIDOREDUCTASE SGDH SUBUNIT |
| Ama35752 | SPERM ASSOCIATED ANTIGEN 7 |
| Ama35753 | |
| Ama35756 | GLYCOSIDASE FAMILY 31 |
| Ama35757 | PROTEIN-S ISOPRENYLCYSTEINE O-METHYLTRANSFERASE |
| Ama35758 | AGAP001705-PA |
| Ama35759 | |
| Ama35760 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Ama35761 | SODIUM/NUCLEOSIDE COTRANSPORTER |
| Ama35762 | |
| Ama35763 | |
| Ama35764 | UNCHARACTERIZED |
| Ama35765 | |
| Ama35767 | MYOSUPPRESSIN RECEPTOR 1, ISOFORM B-RELATED |
| Ama35768 | |
| Ama35769 | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| Ama35769.1.5db7de6e | MANNOSE, PHOSPHOLIPASE, LECTIN RECEPTOR RELATED |
| Ama35770 | ZGC:195170 |
| Ama35771 | SI:CH211-108C17.2-RELATED-RELATED |
| Ama35772 | SI:CH211-108C17.2-RELATED-RELATED |
| Ama35773 | |
| Ama35774 | DEOXYRIBONUCLEASE TATDN2-RELATED |
| Ama35776 | DEOXYRIBONUCLEASE TATDN2-RELATED |
| Ama35778 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Ama35780 | |
| Ama35783 | N4BP1-RELATED |
| Ama35784 | |
| Ama35788 | |
| Ama35789 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
| Ama35790 | TOLL-LIKE RECEPTOR |
| Ama35791 | |
| Ama35792 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
| Ama35796 | NUCLEAR HORMONE RECEPTOR HR3-RELATED |
| Ama35797 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
| Ama35801 | |
| Ama35802 | SCHNURRI, ISOFORM F |
| Ama35803 | DIACYLGLYCEROL KINASE |
| Ama35805 | |
| Ama35806 | PROLYL ENDOPEPTIDASE |
| Ama35807 | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING |
| Ama35809 | |
| Ama35810 | TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED |
| Ama35814 | POTASSIUM CHANNEL, SUBFAMILY K |
| Ama35815 | |
| Ama35817 | RIBOSE-PHOSPHATE DIPHOSPHOKINASE FAMILY MEMBER |
| Ama35818 | |
| Ama35819 | NEUROTRANSMITTER GATED ION CHANNEL |
| Ama35821 | NEUROTRANSMITTER GATED ION CHANNEL |
