The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama35822 | NEUROTRANSMITTER GATED ION CHANNEL |
Ama35823 | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING |
Ama35824 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
Ama35825 | SOLUTE CARRIER FAMILY 13 MEMBER |
Ama35826 | LIPOXYGENASE |
Ama35827 | |
Ama35828 | |
Ama35829 | DNA POLYMERASE |
Ama35830 | DNA POLYMERASE |
Ama35831 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
Ama35832 | |
Ama35833 | |
Ama35834 | STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE |
Ama35835 | GRB2-ASSOCIATED AND REGULATOR OF MAPK PROTEIN FAMILY MEMBER |
Ama35836 | CARBOHYDRATE SULFOTRANSFERASE 15 |
Ama35837 | MYOSIN REGULATORY LIGHT CHAIN 2 |
Ama35838 | MYOSIN REGULATORY LIGHT CHAIN 2 |
Ama35840 | |
Ama35842 | SODIUM-COUPLED MONOCARBOXYLATE TRANSPORTER |
Ama35843 | FRIZZLED |
Ama35846 | ZINC FINGER PROTEIN |
Ama35848 | PEFLIN |
Ama35849 | NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 |
Ama35850 | SGNH_HYDRO DOMAIN-CONTAINING PROTEIN |
Ama35851 | OLIGORIBONUCLEASE, MITOCHONDRIAL |
Ama35852 | WD REPEAT DOMAIN-RELATED |
Ama35853 | FI18240P1-RELATED |
Ama35854 | PROFILIN |
Ama35855 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
Ama35856 | FMRFAMIDE RECEPTOR-RELATED |
Ama35857 | EXS-RELATED PROTEIN |
Ama35858 | |
Ama35859 | |
Ama35861 | METAXIN RELATED |
Ama35862 | |
Ama35863 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama35864 | |
Ama35865 | |
Ama35866 | VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL |
Ama35867 | VOLTAGE AND LIGAND GATED POTASSIUM CHANNEL |
Ama35869 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama35870 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama35871 | PLASMINOGEN-RELATED |
Ama35874 | |
Ama35877 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
Ama35878 | |
Ama35879 | |
Ama35880 | |
Ama35881 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Ama35882 |