The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama35513 | D-GLUCURONYL C5-EPIMERASE |
Ama35514 | TRANSPOSABLE ELEMENT-RELATED |
Ama35515 | SACSIN |
Ama35517 | NOP2 YEAST -RELATED NOL1/NOP2/FMU SUN DOMAIN-CONTAINING |
Ama35518 | CYTOCHROME P450 FAMILY 4 |
Ama35519 | |
Ama35520 | 2-OXO-4-HYDROXY-4-CARBOXY-5-UREIDOIMIDAZOLINE DECARBOXYLASE-RELATED |
Ama35521 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
Ama35522 | CYTOCHROME P450 FAMILY 4 |
Ama35523 | SACSIN |
Ama35524 | SACSIN |
Ama35525 | |
Ama35526 | CYTOCHROME P450 FAMILY 4 |
Ama35527 | |
Ama35528 | CYTOCHROME P450 FAMILY 4 |
Ama35529 | |
Ama35530 | 2-OXO-4-HYDROXY-4-CARBOXY-5-UREIDOIMIDAZOLINE DECARBOXYLASE-RELATED |
Ama35531 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR |
Ama35532 | |
Ama35533 | ELONGATOR COMPLEX PROTEIN 5 |
Ama35534 | CALCIUM BINDING PROTEIN |
Ama35535 | TRIFUNCTIONAL PURINE BIOSYNTHETIC PROTEIN ADENOSINE-3-RELATED |
Ama35536 | |
Ama35537 | |
Ama35539 | SACSIN |
Ama35540 | SACSIN |
Ama35542 | SACSIN |
Ama35543 | SACSIN |
Ama35544 | ZINC FINGER, C3HC4 TYPE (RING FINGER) FAMILY PROTEIN |
Ama35545 | SACSIN |
Ama35546 | |
Ama35548 | DUF614 FAMILY PROTEIN-RELATED |
Ama35549 | SACSIN |
Ama35550 | SACSIN |
Ama35552 | SACSIN |
Ama35553 | SACSIN |
Ama35554 | NLPC_P60 DOMAIN-CONTAINING PROTEIN |
Ama35555 | INACTIVE POLYGLYCYLASE TTLL10 |
Ama35556 | MITOCHONDRIAL CARRIER PROTEIN RIM2 |
Ama35557 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED |
Ama35558 | PROTEIN SIDEKICK |
Ama35559 | PROTEIN SIDEKICK |
Ama35560 | |
Ama35562 | PAIRED BOX PROTEIN PAX-6-RELATED-RELATED |
Ama35563 | DOPAMINE BETA HYDROXYLASE RELATED |
Ama35564 | GLYCOSYLTRANSFERASE 14 FAMILY MEMBER |
Ama35567 | |
Ama35568 | PHYTANOYL-COA DIOXYGENASE-RELATED-RELATED |
Ama35569 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama35570 | PHYTANOYL-COA DIOXYGENASE-RELATED-RELATED |