The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama35111 | |
| Ama35112 | |
| Ama35115 | NUDIX HYDROLASE |
| Ama35116 | |
| Ama35117 | BETA TRANSDUCIN-RELATED PROTEIN |
| Ama35118 | BONUS, ISOFORM C-RELATED |
| Ama35119 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
| Ama35120 | ATP-BINDING CASSETTE ABC TRANSPORTER-RELATED |
| Ama35121 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Ama35123 | |
| Ama35124 | SODIUM/CHLORIDE DEPENDENT TRANSPORTER |
| Ama35125 | |
| Ama35126 | |
| Ama35127 | |
| Ama35128 | BLR2807 PROTEIN |
| Ama35130 | DNA-DIRECTED RNA POLYMERASE II |
| Ama35131 | |
| Ama35132 | |
| Ama35133 | |
| Ama35134 | SOLUTE CARRIER FAMILY 22 MEMBER |
| Ama35136 | NUCLEAR RECEPTOR SUBFAMILY 0 GROUP B |
| Ama35137 | MADF DOMAIN TRANSCRIPTION FACTOR |
| Ama35138 | UNCHARACTERIZED |
| Ama35139 | HILLARIN |
| Ama35140 | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING |
| Ama35141 | MITOCHONDRIAL DICARBOXYLATE CARRIER-RELATED |
| Ama35142 | CYCLIC NUCLEOTIDE PHOSPHODIESTERASE |
| Ama35143 | N-LYSINE METHYLTRANSFERASE KMT5A |
| Ama35144 | SET DOMAIN-CONTAINING PROTEIN-RELATED |
| Ama35146 | |
| Ama35148 | |
| Ama35149 | PROTEIN BARK BEETLE |
| Ama35150 | |
| Ama35152 | |
| Ama35153 | PROTEIN BARK BEETLE |
| Ama35154 | |
| Ama35156 | |
| Ama35157 | |
| Ama35158 | |
| Ama35159 | REVERSE TRANSCRIPTASES |
| Ama35160 | |
| Ama35161 | |
| Ama35162 | PA14 DOMAIN-CONTAINING PROTEIN |
| Ama35165 | |
| Ama35167 | MULTICOPPER OXIDASE-RELATED |
| Ama35171 | ELYS PROTEIN |
| Ama35172 | FOLATE RECEPTOR |
| Ama35173 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Ama35174 | PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE |
| Ama35175 | PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE |
