The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama34903 | |
| Ama34904 | |
| Ama34905 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| Ama34906 | |
| Ama34907 | |
| Ama34908 | |
| Ama34909 | |
| Ama34910 | PALMITOYLTRANSFERASE ZDHHC16 |
| Ama34914 | |
| Ama34915 | N-ACETYLATED-ALPHA-LINKED ACIDIC DIPEPTIDASE |
| Ama34916 | PROTEASE M1 ZINC METALLOPROTEASE |
| Ama34917 | PROTEASOME ASSEMBLY CHAPERONE 4 |
| Ama34918 | SIMILAR TO RIKEN CDNA E130308A19 |
| Ama34920 | |
| Ama34921 | |
| Ama34925 | |
| Ama34926 | |
| Ama34928 | |
| Ama34929 | |
| Ama34931 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Ama34932 | LATROPHILIN RECEPTOR-LIKE PROTEIN A |
| Ama34933 | C-TYPE LECTIN |
| Ama34935 | TRANSPOSABLE ELEMENT-RELATED |
| Ama34937 | ATROPHIN-RELATED |
| Ama34942 | FORKHEAD BOX PROTEIN J2 FAMILY MEMBER |
| Ama34943 | EARLY GAMETOCYTE ENRICHED PHOSPHOPROTEIN EGXP |
| Ama34944 | TRANSPOSABLE ELEMENT-RELATED |
| Ama34945 | TRANSPOSABLE ELEMENT-RELATED |
| Ama34947 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Ama34948 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
| Ama34949 | |
| Ama34950 | |
| Ama34952 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Ama34953 | |
| Ama34954 | |
| Ama34955 | UNNAMED PRODUCT |
| Ama34956 | LISH DOMAIN-CONTAINING PROTEIN ARMC9 |
| Ama34957 | PUTATIVE ATP-ASE |
| Ama34958 | L1 TRANSPOSABLE ELEMENT-RELATED |
| Ama34959 | MITOCHONDRIAL 39S RIBOSOMAL PROTEIN L51 |
| Ama34960 | SYNAPTOTAGMIN |
| Ama34961 | N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL BIOSYNTHETIC PROTEIN |
| Ama34962 | SERINE/THREONINE PROTEIN KINASE |
| Ama34963 | |
| Ama34964 | SLIT RELATED LEUCINE-RICH REPEAT NEURONAL PROTEIN |
| Ama34965 | |
| Ama34967 | F-BOX ONLY PROTEIN 42 |
| Ama34968 | PROTEIN CBG22215 |
| Ama34969 | REVERSE TRANSCRIPTASES |
| Ama34971 | PUTATIVE-RELATED |
