The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama35047 | MUCIN-17 |
Ama35049 | PUTATIVE-RELATED |
Ama35050 | |
Ama35053 | BACTERICIDAL PERMEABILITY-INCREASING BPI PROTEIN-RELATED |
Ama35054 | |
Ama35055 | INHIBITOR OF APOPTOSIS |
Ama35056 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
Ama35057 | AP ENDONUCLEASE |
Ama35058 | L1 TRANSPOSABLE ELEMENT-RELATED |
Ama35059 | L1 TRANSPOSABLE ELEMENT-RELATED |
Ama35060 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
Ama35061 | |
Ama35062 | ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED |
Ama35063 | |
Ama35064 | ATP-DEPENDENT DNA HELICASE |
Ama35065 | SMALL NUCLEAR RIBONUCLEOPROTEIN-ASSOCIATED PROTEIN B AND N |
Ama35067 | UNCHARACTERIZED |
Ama35068 | UNCHARACTERIZED |
Ama35069 | IP01015P-RELATED |
Ama35071 | NUCLEOLAR COMPLEX 2 AND RAD4-RELATED |
Ama35077 | |
Ama35078 | |
Ama35079 | |
Ama35080 | |
Ama35081 | TRANSPOSABLE ELEMENT-RELATED |
Ama35082 | FUMARATE HYDRATASE-RELATED |
Ama35083 | - |
Ama35084 | TUBULIN |
Ama35085 | F-BOX ONLY PROTEIN 38 |
Ama35088 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
Ama35089 | POLY [ADP-RIBOSE] POLYMERASE |
Ama35090 | POLY [ADP-RIBOSE] POLYMERASE |
Ama35092 | POLY [ADP-RIBOSE] POLYMERASE |
Ama35093 | POLY [ADP-RIBOSE] POLYMERASE |
Ama35094 | |
Ama35095 | |
Ama35096 | |
Ama35097 | POLYCYSTIN FAMILY MEMBER |
Ama35099 | |
Ama35100 | HEH2P |
Ama35101 | KRAB AND ZINC FINGER DOMAIN-CONTAINING |
Ama35102 | UNCHARACTERIZED |
Ama35103 | 1,4-DIHYDROXY-2-NAPHTHOATE OCTAPRENYLTRANSFERASE |
Ama35104 | |
Ama35105 | SERINE/THREONINE-PROTEIN KINASE 17 |
Ama35106 | SERINE/THREONINE-PROTEIN KINASE 17 |
Ama35107 | GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN |
Ama35108 | POLY [ADP-RIBOSE] POLYMERASE |
Ama35109 | POLY [ADP-RIBOSE] POLYMERASE |
Ama35110 | MYND-TYPE DOMAIN-CONTAINING PROTEIN |