The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama34973 | CARBAMOYLTRANSFERASE FAMILY MEMBER |
Ama34975 | TRANSCRIPTION FACTOR GATA FAMILY MEMBER |
Ama34976 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
Ama34977 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
Ama34978 | PHOSPHOINOSITIDE 3-KINASE REGULATORY SUBUNIT 4 |
Ama34979 | PCNA-ASSOCIATED FACTOR |
Ama34980 | COPINE FAMILY PROTEIN 1 |
Ama34981 | NEURALIZED |
Ama34983 | DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE 48 KDA SUBUNIT |
Ama34984 | SYNAPTOBREVIN FAMILY MEMBER |
Ama34986 | |
Ama34987 | INHIBITOR OF APOPTOSIS |
Ama34989 | |
Ama34990 | |
Ama34991 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
Ama34992 | |
Ama34993 | UNCHARACTERIZED |
Ama34998 | VOLTAGE-GATED POTASSIUM CHANNEL |
Ama349_5db7b01a | |
Ama34_5db84494 | SIGNAL PEPTIDE, CUB AND EGF-LIKE DOMAIN-CONTAINING |
Ama35000 | |
Ama35003 | TRANSMEMBRANE PROTEIN |
Ama35004 | |
Ama35005 | SOLUTE CARRIER FAMILY 12, CATION COTRANSPORTERS |
Ama35007 | TOLL-LIKE RECEPTOR |
Ama35011 | |
Ama35013 | CYCLINS |
Ama35014 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA |
Ama35016 | VON WILLEBRAND FACTOR C AND EGF DOMAIN-CONTAINING PROTEIN |
Ama35018 | TRANSLOCATION PROTEIN SEC62 |
Ama35020 | METALLOPROTEASE TLDD |
Ama35021 | 3-DEOXY-D-MANNO-OCTULOSONIC-ACID TRANSFERASE/TRNA GUANINE-N 7 - -METHYLTRANSFERASE |
Ama35022 | |
Ama35023 | |
Ama35025 | |
Ama35026 | PROTEIN LZIC |
Ama35027 | CENTAURIN/ARF |
Ama35028 | CENTAURIN/ARF |
Ama35029 | |
Ama35030 | |
Ama35031 | ENOLASE |
Ama35033 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED |
Ama35034 | |
Ama35035 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama35039 | HOMEOBOX PROTEIN SIX |
Ama35041 | LEUCINE RICH REPEAT FAMILY PROTEIN |
Ama35042 | |
Ama35043 | |
Ama35044 | GLYCOLIPID TRANSFER PROTEIN-RELATED |
Ama35046 | ACETYLTRANSFERASE |