The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama35315 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama35316 | |
Ama35317 | TRANSPOSON |
Ama35318 | |
Ama35319 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama35320 | LOW MOLECULAR WEIGHT PROTEIN TYROSINE PHOSPHATASE |
Ama35321 | N-ACETYLGLUCOSAMINE-6-SULFATASE FAMILY MEMBER |
Ama35322 | UNCHARACTERIZED |
Ama35323 | |
Ama35324 | |
Ama35325 | |
Ama35326 | SEX PEPTIDE RECEPTOR |
Ama35327 | GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE |
Ama35328 | OPSIN |
Ama35329 | WNT RELATED |
Ama35333 | INNEXIN |
Ama35335 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama35337 | ZINC FINGER AND SCAN DOMAIN-CONTAINING |
Ama35339 | |
Ama35340 | |
Ama35341 | D-2-HYDROXYGLUTARATE DEHYDROGENASE, MITOCHONDRIAL |
Ama35344 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
Ama35346 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
Ama35347 | SPRY DOMAIN CONTAINING SOCS BOX PROTEIN |
Ama35348 | TRANSMEMBRANE GTPASE FZO1 |
Ama35349 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 8 |
Ama35350 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 8 |
Ama35351 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 8 |
Ama35353 | PROTEIN CBG22215 |
Ama35355 | |
Ama35356 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
Ama35357 | PROTEIN C3ORF33 |
Ama35358 | RETINAL ROD RHODOPSIN-SENSITIVE CGMP 3',5'-CYCLIC PHOSPHODIESTERASE DELTA-SUBUNIT |
Ama35359 | PEROXISOMAL TARGETING SIGNAL 1 RECEPTOR PEX5 |
Ama35360 | - |
Ama35362 | |
Ama35363 | |
Ama35364 | CYTOCHROME P450 508A4-RELATED |
Ama35365 | INNER MEMBRANE TRANSPORTER YGJI-RELATED |
Ama35368 | 14-3-3 PROTEIN |
Ama35369 | D-ERYTHRULOSE REDUCTASE |
Ama35370 | |
Ama35372 | 14-3-3 PROTEIN |
Ama35373 | SOLUTE CARRIER FAMILY 35 |
Ama35374 | |
Ama35375 | DNAJ HOMOLOG SUBFAMILY C MEMBER 11 |
Ama35376 | DNAJ HOMOLOG SUBFAMILY C MEMBER 11 |
Ama35378 | CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA |
Ama35379 | |
Ama35380 | UNCHARACTERIZED |