The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama35381 | TRANSLATION INITIATION FACTOR 5A FAMILY MEMBER |
Ama35382 | TMEM26 PROTEIN |
Ama35383 | |
Ama35384 | |
Ama35385 | POLYCYSTIN FAMILY MEMBER |
Ama35386 | POLYCYSTIN FAMILY MEMBER |
Ama35390 | |
Ama35391 | |
Ama35392 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama35393 | INHIBITOR OF GROWTH PROTEIN |
Ama35395 | |
Ama35396 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama35397 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Ama35399 | GLYCOLIPID TRANSFER PROTEIN-RELATED |
Ama353_5db7b01a | UNCHARACTERIZED |
Ama35400 | TRANSPOSABLE ELEMENT-RELATED |
Ama35401 | BETA-1,4-MANNOSYLTRANSFERASE EGH |
Ama35402 | TRANSMEMBRANE PROTEIN 201 |
Ama35404 | GLYCOLIPID TRANSFER PROTEIN-RELATED |
Ama35407 | GLYCOLIPID TRANSFER PROTEIN-RELATED |
Ama35408 | |
Ama35409 | |
Ama35410 | TRANSLOCON-ASSOCIATED PROTEIN TRAP , GAMMA SUBUNIT |
Ama35411 | |
Ama35412 | PEROXISOME BIOGENESIS FACTOR 2 |
Ama35414 | PEROXISOME BIOGENESIS FACTOR 2 |
Ama35416 | |
Ama35417 | CENTROSOMAL PROTEIN 2 |
Ama35419 | CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18 |
Ama35420 | PROTEIN RER1 |
Ama35421 | ZINC FINGER PROTEIN |
Ama35422 | |
Ama35423 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Ama35424 | |
Ama35425 | |
Ama35426 | ZINC FINGER PROTEIN |
Ama35428 | |
Ama35429 | TRANSPOSABLE ELEMENT-RELATED |
Ama35430 | |
Ama35432 | LEUCINE-, GLUTAMATE- AND LYSINE-RICH PROTEIN 1 |
Ama35433 | LEUCINE-, GLUTAMATE- AND LYSINE-RICH PROTEIN 1 |
Ama35434 | AGAP005574-PA |
Ama35435 | TUMOR NECROSIS FACTOR RECEPTOR SUPERFAMILY MEMBER |
Ama35437 | CELLULAR TUMOR ANTIGEN P53 |
Ama35439 | ZINC FINGER MATRIN-TYPE PROTEIN 3 |
Ama35440 | PHOSPHATIDYLINOSITOL KINASE |
Ama35441 | |
Ama35442 | BROMODOMAIN CONTAINING PROTEIN |
Ama35443 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
Ama35444 |