The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama36367 | NYD-SP28 PROTEIN |
| Ama36369 | INSULIN RECEPTOR SUBSTRATE |
| Ama36370 | TRANSCRIPTION FACTOR GATA FAMILY MEMBER |
| Ama36372 | |
| Ama36373 | |
| Ama36376 | |
| Ama36377 | CALCIUM BINDING PROTEIN |
| Ama36379 | TRANSPOSON |
| Ama36380 | F5/8 TYPE C DOMAIN-CONTAINING PROTEIN |
| Ama36383 | |
| Ama36384 | |
| Ama36385 | |
| Ama36386 | |
| Ama36387 | |
| Ama36389 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Ama36393 | |
| Ama36394 | |
| Ama36395 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Ama36397 | |
| Ama36398 | |
| Ama36399 | |
| Ama363_5db7b01a | NEUROTRANSMITTER GATED ION CHANNEL |
| Ama36400 | |
| Ama36404 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Ama36405 | STAR-RELATED LIPID TRANSFER PROTEIN 9 |
| Ama36407 | |
| Ama36408 | |
| Ama36410 | DYNACTIN 1-RELATED MICROTUBULE-BINDING |
| Ama36411 | |
| Ama36413 | G-PROTEIN COUPLED RECEPTOR |
| Ama36417 | AGAP008221-PA |
| Ama36418 | RETINOBLASTOMA BINDING PROTEIN 8 |
| Ama36419 | |
| Ama36420 | |
| Ama36421 | LD33804P |
| Ama36422 | |
| Ama36424 | CHAPERONIN |
| Ama36426 | ENOYL-COA HYDRATASE |
| Ama36427 | ENOYL-COA HYDRATASE |
| Ama36429 | CHAPERONIN |
| Ama36433 | SACSIN |
| Ama36434 | ZINC FINGER, C3HC4 TYPE (RING FINGER) FAMILY PROTEIN |
| Ama36435 | CEREBRAL PROTEIN-11-RELATED |
| Ama36436 | |
| Ama36438 | GABA-B RECEPTOR |
| Ama36440 | UNCHARACTERIZED |
| Ama36441 | COPINE FAMILY PROTEIN 1 |
| Ama36442 | |
| Ama36443 | XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER |
| Ama36444 | RIIA DOMAIN-CONTAINING PROTEIN 1 |
