The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama36600 | NUCLEAR SEGREGATION PROTEIN BFR1 |
Ama36601 | SCC1 / RAD21 FAMILY MEMBER |
Ama36602 | PYRROLINE-5-CARBOXYLATE REDUCTASE |
Ama36603 | EG:80H7.2 PROTEIN |
Ama36604 | EG:80H7.2 PROTEIN |
Ama36605 | |
Ama36608 | |
Ama36610 | TRANSCRIPTION FACTOR GATA FAMILY MEMBER |
Ama36611 | DED DOMAIN-CONTAINING PROTEIN |
Ama36612 | THAP DOMAIN PROTEIN |
Ama36613 | DED DOMAIN-CONTAINING PROTEIN |
Ama36615 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Ama36616 | |
Ama36618 | GLYCOPROTEIN HORMONE RECEPTOR |
Ama36619 | |
Ama36620 | MYOSIN LIGHT CHAIN 1, 3 |
Ama36622 | COPINE FAMILY PROTEIN 1 |
Ama36624 | COPINE FAMILY PROTEIN 1 |
Ama36625 | ZNF44 PROTEIN |
Ama36627 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED |
Ama36628 | |
Ama36629 | SPOT2-RELATED |
Ama36631 | EPITHELIAL MEMBRANE PROTEIN-RELATED |
Ama36632 | N-ACETYLNEURAMINATE 9-O-ACETYLTRANSFERASE |
Ama36633 | |
Ama36634 | ZNF44 PROTEIN |
Ama36635 | DYNAMIN |
Ama36636 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
Ama36637 | ARMADILLO-TYPE FOLD-RELATED |
Ama36638 | INHIBITOR OF APOPTOSIS |
Ama36640 | |
Ama36641 | |
Ama36642 | |
Ama36643 | GEM-ASSOCIATED PROTEIN 7 |
Ama36644 | |
Ama36645 | |
Ama36647 | TRANSCRIPTIONAL REPRESSOR PROTEIN YY |
Ama36648 | DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING |
Ama36650 | - |
Ama36651 | |
Ama36653 | RHO GTPASE ACTIVATING PROTEIN 18,19-RELATED |
Ama36654 | TETRATRICOPEPTIDE REPEAT PROTEIN 38 |
Ama36655 | NEUROLIGIN |
Ama36656 | CYSTEINE PROTEASE FAMILY C1-RELATED |
Ama36658 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
Ama36659 | BETA1,3-GALACTOSYLTRANSFERASE |
Ama36660 | ODD-SKIPPED - RELATED |
Ama36661 | |
Ama36663 | NUCLEAR HORMONE RECEPTOR |
Ama36665 | PHOSPHOFRUCTOKINASE |