The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama36666 | 60S RIBOSOMAL PROTEIN L19 |
Ama36667 | BCL2-ASSOCIATED ATHANOGENE |
Ama36668 | NUCLEAR RECEPTOR COACTIVATOR |
Ama36669 | TRANSPORTER |
Ama36670 | UDP-GLUCOSE 4-EPIMERASE |
Ama36672 | - |
Ama36673 | |
Ama36674 | VIRAL IAP-ASSOCIATED FACTOR HOMOLOG |
Ama36675 | INTERFERON ALPHA-INDUCIBLE PROTEIN 27 |
Ama36676 | PARANEOPLASTIC ANTIGEN |
Ama36677 | INTERFERON ALPHA-INDUCIBLE PROTEIN 27 |
Ama36678 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
Ama36680 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
Ama36682 | CARBOHYDRATE SULFOTRANSFERASE |
Ama36683 | |
Ama36684 | POLY [ADP-RIBOSE] POLYMERASE |
Ama36685 | REVERSE TRANSCRIPTASES |
Ama36688 | |
Ama36689 | |
Ama36690 | |
Ama36691 | |
Ama36692 | G-PROTEIN COUPLED RECEPTOR |
Ama36693 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama36694 | PROTEIN LYSINE HYDROXYLATION COMPLEX COMPONENT |
Ama36695 | UNCHARACTERIZED |
Ama36696 | BOMBESIN RECEPTOR-ACTIVATED PROTEIN C6ORF89 |
Ama36697 | |
Ama36698 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Ama36699 | DUAL SPECIFICITY PROTEIN KINASE |
Ama366_5db7b01a | UNCHARACTERIZED |
Ama36701 | |
Ama36702 | PAX TRANSCRIPTION ACTIVATION DOMAIN INTERACTING PROTEIN |
Ama36704 | REGULATOR OF TY1 TRANSPOSITION PROTEIN 107 |
Ama36705 | |
Ama36708 | |
Ama36709 | |
Ama36710 | |
Ama36711 | - |
Ama36712 | POTASSIUM CHANNEL TETRAMERIZATION DOMAIN-CONTAINING |
Ama36714 | OS09G0542200 PROTEIN |
Ama36715 | TRANSPOSABLE ELEMENT-RELATED |
Ama36716 | PROTEIN PHOSPHATASE |
Ama36717 | DNA REPAIR PROTEIN RAD51 HOMOLOG 3 RAD51C |
Ama36718 | ORGANIC ANION TRANSPORTER |
Ama36719 | |
Ama36720 | ZINC FINGER PROTEIN |
Ama36721 | KELCH DOMAIN-CONTAINING PROTEIN 9 |
Ama36722 | KELCH DOMAIN-CONTAINING PROTEIN 9 |
Ama36723 | THREE PRIME REPAIR EXONUCLEASE 1, 2 |
Ama36724 | KELCH PROTEIN |