The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama36445 | RIIA DOMAIN-CONTAINING PROTEIN 1 |
Ama36448 | COPINE FAMILY PROTEIN 1 |
Ama36449 | VERY-LONG-CHAIN (3R)-3-HYDROXYACYL-COA DEHYDRATASE |
Ama36450 | UNCHARACTERIZED |
Ama36453 | 5-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE-RELATED |
Ama36454 | NONSENSE-MEDIATED MRNA DECAY PROTEIN 3 |
Ama36455 | |
Ama36456 | NICOTINATE PHOSPHORIBOSYLTRANSFERASE |
Ama36458 | ZINC FINGER AND BTB DOMAIN-CONTAINING |
Ama36460 | |
Ama36461 | HEH2P |
Ama36462 | NAD(P) TRANSHYDROGENASE |
Ama36463 | NADP-SPECIFIC ISOCITRATE DEHYDROGENASE |
Ama36464 | KYNURENINASE |
Ama36465 | OXYSTEROL-BINDING PROTEIN-RELATED |
Ama36467 | VITELLINE MEMBRANE OUTER LAYER PROTEIN I-RELATED |
Ama36468 | MORN REPEAT-CONTAINING PROTEIN 2 |
Ama36469 | DIHYDROLIPOAMIDE ACETYL/SUCCINYL-TRANSFERASE-RELATED |
Ama36470 | DOPAMINE BETA HYDROXYLASE RELATED |
Ama36471 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama36472 | |
Ama36473 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama36474 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
Ama36475 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Ama36476 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Ama36477 | THAP DOMAIN PROTEIN |
Ama36478 | HILLARIN |
Ama36479 | |
Ama36481 | CALCIUM-INDEPENDENT PHOSPHOLIPASE A2 IPLA2 -RELATED |
Ama36483 | ENOLASE (DUF1399) |
Ama36484 | NCK-ASSOCIATED PROTEIN 1 |
Ama36485 | GUANYLYL CYCLASE |
Ama36486 | DOLICHYL-DIPHOSPHOOLIGOSACCHARIDE--PROTEIN GLYCOSYLTRANSFERASE SUBUNIT |
Ama36506 | ATP-DEPENDENT DNA HELICASE |
Ama36507 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama36509 | B-CELL LYMPHOMA/LEUKEMIA 11 |
Ama36512 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
Ama36514 | LIPIN |
Ama36515 | METHYLTRANSFERASE, FKBM FAMILY PROTEIN |
Ama36516 | METHYLTRANSFERASE, FKBM FAMILY PROTEIN |
Ama36517 | LD33804P |
Ama36518 | TRANSCRIPTASE, PUTATIVE-RELATED-RELATED |
Ama36519 | |
Ama36520 | PEPTIDYL-TRNA HYDROLASE PTRHD1-RELATED |
Ama36521 | |
Ama36522 | ASPARTYL/ASPARAGINYL BETA-HYDROXYLASE |
Ama36528 | T-CELL LYMPHOMA BREAKPOINT-ASSOCIATED TARGET 1-RELATED |
Ama36529 | TRANSPOSON |
Ama36530 | ZNF44 PROTEIN |
Ama36531 | PALMITOYLTRANSFERASE ZDHHC16 |