The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama34204 | |
Ama34205 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Ama34206 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama34208 | |
Ama34209 | |
Ama34212 | |
Ama34214 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
Ama34216 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
Ama34217 | |
Ama34218 | HIGH MOBILITY GROUP PROTEIN DSP1 |
Ama34219 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
Ama34220 | ZINC/IRON TRANSPORTER |
Ama34221 | ZINC FINGER PROTEIN ZIC AND GLI |
Ama34222 | CATION-TRANSPORTING ATPASE-RELATED |
Ama34223 | EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN |
Ama34224 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama34225 | EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN |
Ama34226 | |
Ama34227 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama34228 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama34229 | ZINC FINGER PROTEIN |
Ama34231 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama34232 | |
Ama34234 | - |
Ama34237 | MYOSUPPRESSIN RECEPTOR 1, ISOFORM B-RELATED |
Ama34238 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
Ama34240 | |
Ama34241 | |
Ama34242 | HISTONE H2B |
Ama34244 | |
Ama34249 | |
Ama34250 | |
Ama34251 | BONUS, ISOFORM C-RELATED |
Ama34252 | DELTA-1-PYRROLINE-5-CARBOXYLATE DEHYDROGENASE 1, ISOFORM A-RELATED |
Ama34253 | SOLUTE CARRIER FAMILY 5 |
Ama34254 | LEUCINE-RICH REPEAT-CONTAINING PROTEIN 71 |
Ama34257 | |
Ama34258 | AGAP001331-PA-RELATED |
Ama34259 | |
Ama34260 | CADHERIN DOMAIN-CONTAINING PROTEIN |
Ama34264 | VOLTAGE-GATED POTASSIUM CHANNEL |
Ama34266 | VOLTAGE-GATED POTASSIUM CHANNEL |
Ama34267 | POLYCYSTIN FAMILY MEMBER |
Ama34268 | POLYCYSTIN FAMILY MEMBER |
Ama34270 | |
Ama34271 | HEPARAN SULFATE SULFOTRANSFERASE |
Ama34272 | |
Ama34273 | RNA 3' TERMINAL PHOSPHATE CYCLASE |
Ama34274 | BETA-CAROTENE DIOXYGENASE |
Ama34277 | PLECKSTRIN HOMOLOGY DOMAIN CONTAINING PROTEIN |