The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama33790 | METHANETHIOL OXIDASE |
| Ama33792 | |
| Ama33793 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Ama33794 | CELL DIVISION CYCLE 16,23,27 |
| Ama33795 | A-KINASE ANCHOR PROTEIN 14 |
| Ama33796 | MIP11318P |
| Ama33797 | |
| Ama33798 | LEUCOKININ RECEPTOR-RELATED |
| Ama33799 | |
| Ama33800 | BONUS, ISOFORM C-RELATED |
| Ama33801 | |
| Ama33802 | WNT RELATED |
| Ama33803 | ANKYRIN DOMAIN-CONTAINING |
| Ama33804 | PANTOTHENATE KINASE |
| Ama33805 | |
| Ama33806 | |
| Ama33807 | ZINC FINGER PROTEIN ZIC AND GLI |
| Ama33808 | |
| Ama33809 | |
| Ama33810 | |
| Ama33811 | O-ACYLTRANSFERASE |
| Ama33812 | |
| Ama33813 | MCT-1 PROTEIN |
| Ama33814 | |
| Ama33815 | |
| Ama33816 | |
| Ama33817 | TRANSMEMBRANE PROTEIN |
| Ama33820 | INHIBITOR OF APOPTOSIS |
| Ama33821 | MANNOSE-P-DOLICHOL UTILIZATION DEFECT 1 LEC35 -RELATED |
| Ama33822 | |
| Ama33825 | ATP-DEPENDENT DNA HELICASE |
| Ama33828 | SOX TRANSCRIPTION FACTOR |
| Ama33836 | SERINE/THREONINE-PROTEIN KINASE PLK |
| Ama33837 | GPALPP MOTIFS-CONTAINING PROTEIN 1 |
| Ama33838 | FUN14 DOMAIN CONTAINING |
| Ama33839 | - |
| Ama33841 | LYSINE-SPECIFIC DEMETHYLASE |
| Ama33843 | LYSINE-SPECIFIC DEMETHYLASE |
| Ama33844 | LYSINE-SPECIFIC DEMETHYLASE |
| Ama33849 | FANCONI ANEMIA GROUP G PROTEIN FAMILY MEMBER |
| Ama33850 | METHIONINE SULFOXIDE REDUCTASE |
| Ama33853 | POLY [ADP-RIBOSE] POLYMERASE |
| Ama33855 | |
| Ama33857 | - |
| Ama33858 | |
| Ama33859 | |
| Ama33860 | - |
| Ama33861 | |
| Ama33864 | |
| Ama33865 | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS |
