About Archivesica marissinica

The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Archivesica marissinicaMolluscaDeep-Sea ClamHydrothermal vent1,361Haima cold seep in the South China Sea2291877

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM1484369v11.5GbChromosome2020JABXNX01Hong Kong Baptist UniversityPRJNA62989893.50%28,949

References
TitleJournalPubmed ID
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic ClamMolecular Biology and Evolution32956455

Gene Information

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Gene IDDescription
Ama33428
Ama33430RNA PROCESSING PROTEIN LD23810P
Ama33431DNA POLYMERASE DELTA SUBUNIT 3
Ama33432
Ama33433RIBOSOMAL PROTEIN L2
Ama334342'-DEOXYNUCLEOSIDE 5'-PHOSPHATE N-HYDROLASE 1
Ama33436PHOSPHOLIPID SCRAMBLASE-RELATED
Ama33437
Ama33438BASIC LEUCINE ZIPPER NUCLEAR FACTOR 1 BLZF1 PROTEIN
Ama33439ANTIGEN BSP, PUTATIVE-RELATED
Ama33440DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED
Ama33441VITELLINE MEMBRANE OUTER LAYER PROTEIN I-RELATED
Ama33442PUTATIVE-RELATED
Ama33443L1 TRANSPOSABLE ELEMENT-RELATED
Ama33444PARANEOPLASTIC ANTIGEN
Ama33445INHIBITOR OF APOPTOSIS
Ama33446
Ama33447RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR
Ama33449VITELLINE MEMBRANE OUTER LAYER PROTEIN I-RELATED
Ama33450RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR
Ama33451
Ama33452PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE
Ama33453GUANYLYL CYCLASE
Ama33454PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE
Ama33455PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE
Ama33456
Ama33459
Ama33460DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2
Ama33461
Ama33462CHLORIDE CONDUCTANCE REGULATORY PROTEIN ICLN
Ama33463HFM1, ATP DEPENDENT DNA HELICASE HOMOLOG
Ama33466CCHC-TYPE DOMAIN-CONTAINING PROTEIN
Ama33467OMEGA-6 FATTY ACID DESATURASE, CHLOROPLASTIC
Ama33468
Ama33469RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR
Ama33470INHIBITOR OF APOPTOSIS
Ama33471
Ama33472
Ama33473X-RAY RADIATION RESISTANCE ASSOCIATED PROTEIN 1 XRRA1
Ama33474
Ama33475
Ama33476BONUS, ISOFORM C-RELATED
Ama33477BONUS, ISOFORM C-RELATED
Ama33479
Ama33481BONUS, ISOFORM C-RELATED
Ama33482BONUS, ISOFORM C-RELATED
Ama33483
Ama33484TRANSPOSON
Ama33488BONUS, ISOFORM C-RELATED
Ama33489BONUS, ISOFORM C-RELATED
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