The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama33230 | MONOCARBOXYLATE TRANSPORTER |
Ama33231 | DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 |
Ama33232 | |
Ama33234 | |
Ama33235 | |
Ama33237 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama33238 | |
Ama33239 | |
Ama33240 | ARRESTIN |
Ama33241 | ACYL-COA DEHYDROGENASE |
Ama33242 | UNCHARACTERIZED |
Ama33243 | MKRN2 OPPOSITE STRAND PROTEIN |
Ama33244 | |
Ama33245 | |
Ama33246 | |
Ama33247 | AMYLOID PROTEIN-BINDING PROTEIN 2 |
Ama33249 | CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE |
Ama33251 | |
Ama33252 | T-COMPLEX-ASSOCIATED-TESTIS-EXPRESSED 1/ DYNEIN LIGHT CHAIN |
Ama33253 | - |
Ama33255 | 20 KD NUCLEAR CAP BINDING PROTEIN |
Ama33256 | GLYCOSYLTRANSFERASE |
Ama33257 | BONUS, ISOFORM C-RELATED |
Ama33258 | IMPORTIN ALPHA |
Ama33259 | STEROL ISOMERASE |
Ama33261 | CHITIN BINDING PERITROPHIN-A |
Ama33262 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
Ama33265 | |
Ama33267 | EG:BACR7A4.20 PROTEIN |
Ama33268 | CALPAIN |
Ama33270 | TUMOR NECROSIS FACTOR FAMILY MEMBER |
Ama33271 | |
Ama33272 | UNC-93 RELATED |
Ama33273 | THAP DOMAIN PROTEIN |
Ama33274 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Ama33276 | IP13529P |
Ama33277 | |
Ama33278 | |
Ama33279 | OS05G0300700 PROTEIN |
Ama33280 | LD41958P |
Ama33281 | MONOCARBOXYLATE TRANSPORTER |
Ama33282 | TATD FAMILY DEOXYRIBONUCLEASE |
Ama33283 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
Ama33284 | MONOCARBOXYLATE TRANSPORTER |
Ama33285 | |
Ama33286 | |
Ama33288 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama33290 | APPLE DOMAIN-CONTAINING PROTEIN |
Ama33291 | G-PROTEIN COUPLED RECEPTOR |
Ama33292 |