The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama32950 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
Ama32951 | TUMOR NECROSIS FACTOR FAMILY MEMBER |
Ama32954 | |
Ama32955 | PROHIBITIN |
Ama32956 | TETRASPANIN |
Ama32958 | WD REPEAT DOMAIN 44 |
Ama32960 | |
Ama32961 | |
Ama32962 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 4 |
Ama32968 | URINARY PROTEIN RUP /ACROSOMAL PROTEIN SP-10 |
Ama32970 | |
Ama32971 | |
Ama32972 | CYTOCHROME P450 FAMILY 4 |
Ama32974 | ATP-BINDING CASSETTE SUB-FAMILY C |
Ama32979 | |
Ama32980 | |
Ama32981 | |
Ama32982 | NAD(P)-BINDING ROSSMANN-FOLD SUPERFAMILY PROTEIN-RELATED |
Ama32983 | |
Ama32984 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
Ama32985 | |
Ama32989 | HILLARIN |
Ama32999 | SGNH_HYDRO DOMAIN-CONTAINING PROTEIN |
Ama329_5db7b01a | PROTEIN FAM227B |
Ama32_5db7b01a | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
Ama33000 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama33001 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
Ama33002 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama33004 | ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY |
Ama33005 | |
Ama33006 | BIOTINIDASE-RELATED |
Ama33007 | SPHINGOMYELIN PHOSPHODIESTERASE |
Ama33008 | |
Ama33009 | |
Ama33012 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama33013 | AQUAPORIN TRANSPORTER |
Ama33014 | |
Ama33015 | DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A |
Ama33017 | TRANSMEMBRANE PROTEIN 256 |
Ama33018 | 2,5-DIKETO-D-GLUCONIC ACID REDUCTASE |
Ama33019 | TRANSLATION FACTOR |
Ama33020 | SERINE PROTEASE INHIBITOR, SERPIN |
Ama33022 | SERINE PROTEASE INHIBITOR, SERPIN |
Ama33023 | SERINE PROTEASE INHIBITOR, SERPIN |
Ama33024 | SERINE PROTEASE INHIBITOR, SERPIN |
Ama33025 | SERINE PROTEASE INHIBITOR, SERPIN |
Ama33026 | |
Ama33027 | |
Ama33028 | CALPONIN HOMOLOGY DOMAIN-CONTAINING PROTEIN DDB_G0272472-RELATED |
Ama33029 |