The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama32747 | |
| Ama32750 | |
| Ama32751 | NOP14 |
| Ama32752 | |
| Ama32753 | |
| Ama32754 | WD40 REPEAT PROTEIN |
| Ama32755 | |
| Ama32756 | |
| Ama32757 | |
| Ama32758 | WD40 REPEAT PROTEIN |
| Ama32759 | TRANSPOSABLE ELEMENT-RELATED |
| Ama32760 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
| Ama32761 | |
| Ama32762 | |
| Ama32763 | |
| Ama32764 | SET DOMAIN-CONTAINING PROTEIN-RELATED |
| Ama32765 | BETA-HEXOSAMINIDASE |
| Ama32767 | PUTATIVE-RELATED |
| Ama32768 | |
| Ama32769 | |
| Ama32770 | ATP-DEPENDENT RNA HELICASE DBP3 |
| Ama32771 | |
| Ama32772 | |
| Ama32773 | |
| Ama32774 | BONUS, ISOFORM C-RELATED |
| Ama32775 | TRANSPOSON |
| Ama32777 | |
| Ama32778 | REVERSE TRANSCRIPTASES |
| Ama32779 | |
| Ama32781 | |
| Ama32782 | |
| Ama32783 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Ama32784 | |
| Ama32785 | BTB DOMAIN-CONTAINING PROTEIN |
| Ama32786 | |
| Ama32787 | |
| Ama32788 | |
| Ama32789 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Ama32790 | DEOXYRIBONUCLEASE TATDN2-RELATED |
| Ama32791 | CCHC-TYPE DOMAIN-CONTAINING PROTEIN |
| Ama32792 | PROTEIN KINASE DOMAIN-CONTAINING PROTEIN |
| Ama32793 | |
| Ama32794 | DED DOMAIN-CONTAINING PROTEIN |
| Ama32795 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Ama32796 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Ama32798 | DEOXYRIBONUCLEASE TATDN2-RELATED |
| Ama32799 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED |
| Ama32800 | MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 4 |
| Ama32814 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Ama32815 | CALPAIN |
