The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama32303 | ZINC FINGER PROTEIN 142 |
Ama32305 | UNNAMED PRODUCT |
Ama32310 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama32311 | TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED |
Ama32312 | EXPORTIN-6 |
Ama32314 | EUKARYOTE SPECIFIC DSRNA BINDING PROTEIN |
Ama32315 | DYNACTIN SUBUNIT |
Ama32316 | DEOXYNUCLEOSIDE KINASE |
Ama32318 | ALKALINE PHOSPHATASE |
Ama32319 | ALKALINE PHOSPHATASE |
Ama32320 | ALKALINE PHOSPHATASE |
Ama32321 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
Ama32322 | |
Ama32324 | THAP DOMAIN PROTEIN |
Ama32325 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Ama32326 | |
Ama32327 | THAP DOMAIN PROTEIN |
Ama32328 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Ama32329 | |
Ama32330 | ADENYLATE CYCLASE TYPE 1 |
Ama32331 | |
Ama32332 | WOLFRAMIN |
Ama32333 | CEREBELLIN-RELATED |
Ama32334 | |
Ama32336 | SERINE/THREONINE-PROTEIN KINASE 16 |
Ama32337 | |
Ama32338 | |
Ama32339 | UNCHARACTERIZED |
Ama32341 | INDOLEAMINE 2,3-DIOXYGENASE |
Ama32342 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST |
Ama32343 | ATP-DEPENDENT DNA HELICASE |
Ama32344 | THAP DOMAIN-CONTAINING PROTEIN 6 |
Ama32345 | PEPTIDASE |
Ama32347 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama32348 | |
Ama32349 | |
Ama32352 | HOMEOBOX PROTEIN NKX |
Ama32354 | RNA METHYLASE-RELATED |
Ama32355 | |
Ama32356 | |
Ama32357 | NEUROTRANSMITTER GATED ION CHANNEL |
Ama32359 | |
Ama32361 | EXPRESSED PROTEIN |
Ama32370 | - |
Ama32371 | GLYCOPROTEIN HORMONE RECEPTOR |
Ama32372 | BETA-CAROTENE DIOXYGENASE |
Ama32373 | |
Ama32374 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama32378 | |
Ama32379 |