The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama32224 | |
| Ama32226 | DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A |
| Ama32227 | |
| Ama32229 | TYROSINE-PROTEIN PHOSPHATASE |
| Ama32232 | SEPIAPTERIN REDUCTASE |
| Ama32233 | |
| Ama32234 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
| Ama32235 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
| Ama32236 | APPLE DOMAIN-CONTAINING PROTEIN |
| Ama32237 | TRANSMEMBRANE PROTEIN 19 |
| Ama32238 | |
| Ama32242 | SI:CH211-67E16.11 |
| Ama32243 | MPS ONE BINDER KINASE ACTIVATOR-LIKE MOB |
| Ama32244 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Ama32245 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Ama32247 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Ama32249 | |
| Ama32250 | SODIUM/NUCLEOSIDE COTRANSPORTER |
| Ama32251 | UBIQUITIN-CONJUGATING ENZYME E2 |
| Ama32252 | HEPATOCELLULAR CARCINOMA-ASSOCIATED ANTIGEN |
| Ama32253 | TELOMERE-ASSOCIATED PROTEIN RIF1 |
| Ama32254 | TELOMERE-ASSOCIATED PROTEIN RIF1 |
| Ama32256 | TELOMERE-ASSOCIATED PROTEIN RIF1 |
| Ama32257 | |
| Ama32258 | |
| Ama32259 | PHOSPHOENOLPYRUVATE SYNTHASE-RELATED |
| Ama32263 | |
| Ama32264 | |
| Ama32265 | RETICULOPHAGY REGULATOR 3 |
| Ama32266 | |
| Ama32267 | TUBULIN |
| Ama32268 | 60S RIBOSOMAL PROTEIN L37A |
| Ama32271 | |
| Ama32275 | SECERNIN |
| Ama32276 | SECERNIN |
| Ama32277 | |
| Ama32279 | KINESIN-RELATED |
| Ama32281 | - |
| Ama32283 | |
| Ama32285 | ECTOPIC P GRANULES PROTEIN 5 HOMOLOG |
| Ama32287 | CONTACTIN 5 |
| Ama32288 | |
| Ama32289 | ZGC:195170 |
| Ama32291 | |
| Ama32292 | |
| Ama32294 | MOLTING PROTEIN MLT-4 |
| Ama32298 | MEF2B PROTEIN |
| Ama32299 | |
| Ama32301 | ACETYLTRANSFERASE |
| Ama32302 |
