The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama31829 | INHIBITOR OF APOPTOSIS |
Ama31830 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
Ama31832 | CELL DIVISION PROTEIN KINASE |
Ama31833 | 3'(2'),5'-BISPHOSPHATE NUCLEOTIDASE 1 |
Ama31834 | WD40 REPEAT PROTEIN 12, 37 |
Ama31835 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
Ama31836 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
Ama31838 | - |
Ama31839 | PDZ DOMAIN-CONTAINING PROTEIN |
Ama31843 | GRANULIN |
Ama31845 | |
Ama31846 | |
Ama31847 | 4.1 G PROTEIN |
Ama31848 | |
Ama31849 | - |
Ama31851 | |
Ama31852 | |
Ama31854 | REDUCED GROWTH PHENOTYPE 1 RGP1, YEAST -RELATED |
Ama31855 | SAP DOMAIN-CONTAINING RIBONUCLEOPROTEIN |
Ama31856 | |
Ama31858 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
Ama31859 | NY-REN-41 ANTIGEN L15 -RELATED |
Ama31860 | DYNEIN HEAVY CHAIN |
Ama31861 | DYNEIN HEAVY CHAIN |
Ama31862 | DYNEIN HEAVY CHAIN |
Ama31863 | DYNEIN HEAVY CHAIN |
Ama31864 | DYNEIN HEAVY CHAIN |
Ama31865 | BOULE-RELATED |
Ama31867 | DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 |
Ama31869 | |
Ama31873 | DEPHOSPHO-COA KINASE-RELATED |
Ama31874 | APG9 AUTOPHAGY 9 |
Ama31875 | ZINC FINGER PROTEIN |
Ama31876 | TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED |
Ama31878 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
Ama31881 | UNCHARACTERIZED |
Ama31882 | SIGNAL PEPTIDE PEPTIDASE |
Ama31883 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
Ama31884 | |
Ama31888 | |
Ama31889 | |
Ama31890 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
Ama31891 | |
Ama31893 | |
Ama31894 | SET DOMAIN-CONTAINING PROTEIN-RELATED |
Ama31895 | |
Ama31896 | SET DOMAIN-CONTAINING PROTEIN-RELATED |
Ama31897 | |
Ama31898 | |
Ama31899 | ELONGATOR COMPLEX PROTEIN 2 |