The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama31509 | |
Ama31510 | |
Ama31512 | |
Ama31513 | AUTOPHAGY-RELATED 2, ISOFORM A |
Ama31514 | |
Ama31518 | |
Ama31519 | PROTEIN DISULFIDE ISOMERASE |
Ama31520 | HISTONE DEACETYLASE HDAC1-RELATED |
Ama31523 | HOMEO BOX HB9 LIKE A-RELATED |
Ama31524 | RHO FAMILY GTPASE |
Ama31525 | STEROL O-ACYLTRANSFERASE |
Ama31526 | INTERFERON-INDUCIBLE GTPASE |
Ama31527 | INTERFERON-INDUCIBLE GTPASE |
Ama31528 | INTERFERON-INDUCIBLE GTPASE |
Ama31529 | INTERFERON-INDUCIBLE GTPASE |
Ama31530 | TRANSPOSABLE ELEMENT-RELATED |
Ama31531 | INTERFERON-INDUCIBLE GTPASE |
Ama31532 | AP ENDONUCLEASE |
Ama31533 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama31535 | |
Ama31536 | SOLUTE CARRIER FAMILY 40 MEMBER |
Ama31538 | WD40 REPEAT PROTEIN |
Ama31540 | |
Ama31541 | - |
Ama31542 | |
Ama31543 | FORMATE DEHYDROGENASE 1 |
Ama31544 | |
Ama31546 | ZINC FINGER PROTEIN |
Ama31547 | SODIUM/NUCLEOSIDE COTRANSPORTER |
Ama31548 | G-PROTEIN COUPLED RECEPTOR FAMILY 1 MEMBER |
Ama31549 | ROLLING PEBBLES, ISOFORM B |
Ama31550 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama31551 | SODIUM/NUCLEOSIDE COTRANSPORTER |
Ama31553 | AQUAPORIN |
Ama31556 | |
Ama31557 | |
Ama31558 | UNCHARACTERIZED DUF1308 |
Ama31559 | ATP-DEPENDENT DNA HELICASE |
Ama31560 | THAP DOMAIN PROTEIN |
Ama31561 | |
Ama31564 | |
Ama31565 | THREE PRIME REPAIR EXONUCLEASE 1, 2 |
Ama31567 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama31569 | N-ACETYLGALACTOSAMINYLTRANSFERASE |
Ama31575 | ALDEHYDE DEHYDROGENASE-RELATED |
Ama31576 | |
Ama31578 | RAC GTPASE-ACTIVATING PROTEIN 1 |
Ama31579 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
Ama31580 | |
Ama31581 |