The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama31441 | |
| Ama31442 | |
| Ama31445 | |
| Ama31448 | HOMEOBOX PROTEIN ARISTALESS |
| Ama31450 | |
| Ama31451 | INHIBITOR OF APOPTOSIS |
| Ama31452 | |
| Ama31453 | |
| Ama31454 | |
| Ama31455 | N-ACETYLGALACTOSAMINYLTRANSFERASE |
| Ama31456 | CELL DIVISION CYCLE 16,23,27 |
| Ama31457 | |
| Ama31458 | SULFOTRANSFER_1 DOMAIN-CONTAINING PROTEIN |
| Ama31459 | UNCHARACTERIZED |
| Ama31461 | UBIQUITIN LIGASE E3 ALPHA-RELATED |
| Ama31463 | UBIQUITIN LIGASE E3 ALPHA-RELATED |
| Ama31464 | UBIQUITIN LIGASE E3 ALPHA-RELATED |
| Ama31466 | ALKALINE PHOSPHATASE |
| Ama31467 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Ama31468 | |
| Ama31469 | TRANSLATION ELONGATION FACTOR-RELATED |
| Ama31471 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
| Ama31473 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
| Ama31474 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
| Ama31475 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
| Ama31476 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
| Ama31479 | |
| Ama31480 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
| Ama31481 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
| Ama31483 | |
| Ama31484 | |
| Ama31485 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Ama31486 | |
| Ama31487 | |
| Ama31488 | PROTEIN CBG26694 |
| Ama31489 | |
| Ama31490 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| Ama31491 | |
| Ama31494 | NUDIX T16 FAMILY MEMBER |
| Ama31496 | |
| Ama31497 | BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 |
| Ama31498 | |
| Ama31499 | |
| Ama31500 | |
| Ama31501 | |
| Ama31502 | |
| Ama31503 | |
| Ama31504 | EXTRACELLULAR MATRIX GLYCOPROTEIN RELATED |
| Ama31506 | PROTEIN FAM221A-RELATED |
| Ama31507 |
