About Archivesica marissinica

The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Archivesica marissinicaMolluscaDeep-Sea ClamHydrothermal vent1,361Haima cold seep in the South China Sea2291877

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM1484369v11.5GbChromosome2020JABXNX01Hong Kong Baptist UniversityPRJNA62989893.50%28,949

References
TitleJournalPubmed ID
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic ClamMolecular Biology and Evolution32956455

Gene Information

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Gene IDDescription
Ama31020
Ama31021
Ama31022
Ama31023OUTER DENSE FIBER OF SPERM TAILS 2
Ama31024
Ama31026
Ama31028PREFOLDIN SUBUNIT 5
Ama31029PREFOLDIN SUBUNIT 5
Ama31032NEUROTRANSMITTER GATED ION CHANNEL
Ama31034NEUROTRANSMITTER GATED ION CHANNEL
Ama31035DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2
Ama31036REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Ama31037
Ama31038
Ama31039CYSTEINE-RICH SECRETORY PROTEIN-RELATED
Ama31041
Ama31042STRIATED MUSCLE ACTIVATOR OF RHO-DEPENDENT SIGNALING-RELATED
Ama31043
Ama31045ALPHA-TOCOPHEROL TRANSFER PROTEIN-RELATED
Ama31046CARBOHYDRATE SULFOTRANSFERASE
Ama31048DUAL SPECIFICITY PROTEIN PHOSPHATASE 12 FAMILY MEMBER
Ama31050PROTEIN SCAI
Ama31051TRANSPOSON
Ama31052VACUOLAR ATP SYNTHASE SUBUNIT G
Ama3105360 KDA RIBONUCLEOPROTEIN SSA/RO
Ama31054
Ama31061CENTROSOMAL PROTEIN OF 170 KDA
Ama31062U3 SMALL NUCLEOLAR RNA INTERACTING PROTEIN 2
Ama31063
Ama31064
Ama31065PROTEIN CBR-CLEC-78
Ama31067SERINE/THREONINE-PROTEIN KINASE PIM
Ama31068IKB KINASE
Ama31069IKB KINASE
Ama31071RING FINGER AND SRY DOMAIN-CONTAINING
Ama31072RING FINGER AND SRY DOMAIN-CONTAINING
Ama31073RAB GDP-DISSOCIATION INHIBITOR
Ama31074DEHYDROGENASE RELATED
Ama31075
Ama31077
Ama31079
Ama31080LD33695P
Ama31082STAR-RELATED LIPID TRANSFER PROTEIN 9
Ama31083HEN1
Ama31084
Ama31085PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE
Ama31086
Ama31087-
Ama31088TYROSINASE FAMILY MEMBER
Ama31090
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