About Archivesica marissinica

The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Archivesica marissinicaMolluscaDeep-Sea ClamHydrothermal vent1,361Haima cold seep in the South China Sea2291877

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM1484369v11.5GbChromosome2020JABXNX01Hong Kong Baptist UniversityPRJNA62989893.50%28,949

References
TitleJournalPubmed ID
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic ClamMolecular Biology and Evolution32956455

Gene Information

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Gene IDDescription
Ama31091
Ama31093
Ama31094HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Ama31096WD40 REPEAT PROTEIN
Ama31097FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS
Ama310_5db7b01aRHOMBOID-RELATED PROTEIN
Ama31102SRCR DOMAIN-CONTAINING PROTEIN
Ama31106VALYL-TRNA SYNTHETASES
Ama31108TFIIH, POLYPEPTIDE 4
Ama31109TFIIH, POLYPEPTIDE 4
Ama31111REPETIN
Ama31113TYROSINE-PROTEIN KINASE
Ama31118PEPTIDYL-TRNA HYDROLASE
Ama31119UNCHARACTERIZED
Ama31120
Ama31122SODIUM/NUCLEOSIDE COTRANSPORTER
Ama31123NUCLEAR HORMONE RECEPTOR
Ama31125PHOSPHATIDATE CYTIDYLYLTRANSFERASE
Ama31126CALPAIN-7
Ama31128BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
Ama31130BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWIST
Ama31131
Ama31133
Ama3113452 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Ama31136URACIL-DNA GLYCOSYLASE
Ama31138GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2
Ama31139ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Ama31140
Ama31141URACIL-DNA GLYCOSYLASE
Ama31142INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Ama31143
Ama31144
Ama31145INHIBITOR OF APOPTOSIS
Ama31146PROTEIN CBG10425
Ama31147PROTEIN CBG10425
Ama31151PEPTIDOGLYCAN RECOGNITION PROTEIN
Ama31152
Ama31154ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Ama31157URACIL-DNA GLYCOSYLASE
Ama31158ULP_PROTEASE DOMAIN-CONTAINING PROTEIN
Ama31159CXC DOMAIN-CONTAINING PROTEIN-RELATED
Ama31160CENTROMERE PROTEIN E
Ama31162CARNITINE O-ACYLTRANSFERASE
Ama31164ES-2 PROTEIN - RELATED
Ama3116526S PROTEASOME REGULATORY SUBUNIT
Ama31166CHONDROITIN SYNTHASE
Ama31167N-MYRISTOYL TRANSFERASE
Ama31168
Ama31170
Ama31171
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