About Archivesica marissinica

The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Archivesica marissinicaMolluscaDeep-Sea ClamHydrothermal vent1,361Haima cold seep in the South China Sea2291877

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM1484369v11.5GbChromosome2020JABXNX01Hong Kong Baptist UniversityPRJNA62989893.50%28,949

References
TitleJournalPubmed ID
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic ClamMolecular Biology and Evolution32956455

Gene Information

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Gene IDDescription
Ama32480
Ama32481DNA REPLICATION REGULATOR DPB11-RELATED
Ama32487ATP-DEPENDENT DNA HELICASE
Ama32488REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Ama32489REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Ama32490N-ACETYLGALACTOSAMINYLTRANSFERASE
Ama32491L1 TRANSPOSABLE ELEMENT-RELATED
Ama32492CYTOCHROME P450 FAMILY 4
Ama32494
Ama32495TYROSINE-PROTEIN KINASE RECEPTOR
Ama32497THAP DOMAIN PROTEIN
Ama32498THAP DOMAIN PROTEIN
Ama32499EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Ama32500TYROSINE-PROTEIN KINASE RECEPTOR
Ama32502
Ama32504TOL-PAL SYSTEM PROTEIN TOLA
Ama32505TOL-PAL SYSTEM PROTEIN TOLA
Ama32506GLYCOPROTEIN HORMONE RECEPTOR
Ama32507
Ama32508BINDING OXIDOREDUCTASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G17690)-RELATED
Ama32509PROLINE IMINOPEPTIDASE
Ama3251152 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED
Ama32512ADIPOCYTE-SPECIFIC PROTEIN 4-RELATED
Ama32513CYCLIN DEPENDANT KINASE-5 ACTIVATOR
Ama32519TOLL-LIKE RECEPTOR
Ama32520
Ama32522DNA ANNEALING HELICASE AND ENDONUCLEASE ZRANB3 FAMILY MEMBER
Ama32523COLLAGEN ALPHA
Ama32525MUTATED IN BLADDER CANCER 1
Ama32526
Ama32527ORMDL PROTEINS
Ama32528
Ama32529-
Ama32531TATA-BOX BINDING PROTEIN
Ama32532INTEGRASE CORE DOMAIN CONTAINING PROTEIN
Ama32533THAP DOMAIN PROTEIN
Ama32534EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Ama32535
Ama32536ABC TRANSPORTER B FAMILY
Ama32539ABC TRANSPORTER B FAMILY
Ama32542INTEGRIN ALPHA
Ama32543INTEGRIN ALPHA
Ama32544FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED
Ama32545INTEGRIN BETA SUBUNIT
Ama32547LATE SECRETORY PATHWAY PROTEIN AVL9-RELATED
Ama32548L1 TRANSPOSABLE ELEMENT-RELATED
Ama32549
Ama32550
Ama32551DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2
Ama32552
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