The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama32629 | |
| Ama32630 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| Ama32631 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Ama32632 | |
| Ama32634 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| Ama32637 | |
| Ama32638 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Ama32639 | KELCH PROTEIN |
| Ama32640 | MATRIX METALLOPROTEINASE |
| Ama32641 | UBAP1-MVB12-ASSOCIATED (UMA)-DOMAIN CONTAINING PROTEIN 1 |
| Ama32642 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| Ama32643 | GLYCOSYL TRANSFERASE-RELATED |
| Ama32644 | |
| Ama32645 | |
| Ama32646 | |
| Ama32647 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
| Ama32648 | INHIBITOR OF APOPTOSIS |
| Ama32649 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
| Ama32650 | |
| Ama32651 | |
| Ama32653 | ENDONUCLEASE-RELATED |
| Ama32655 | |
| Ama32658 | |
| Ama32659 | CELL FATE DETERMINING PROTEIN MAB21-RELATED |
| Ama32660 | SCHWANNOMIN INTERACTING PROTEIN 1 |
| Ama32661 | SCHWANNOMIN INTERACTING PROTEIN 1 |
| Ama32666 | |
| Ama32667 | |
| Ama32668 | ATP-DEPENDENT CLP PROTEASE ATP-BINDING SUBUNIT CLPX-LIKE, MITOCHONDRIAL-RELATED |
| Ama32669 | |
| Ama32670 | ENDONUCLEASE-RELATED |
| Ama32671 | TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT |
| Ama32672 | |
| Ama32673 | MONOCARBOXYLATE TRANSPORTER |
| Ama32674 | MONOCARBOXYLATE TRANSPORTER |
| Ama32675 | |
| Ama32676 | |
| Ama32677 | TUMOR NECROSIS FACTOR FAMILY MEMBER |
| Ama32678 | |
| Ama32679 | TUMOR NECROSIS FACTOR FAMILY MEMBER |
| Ama32680 | MYOSIN LIGHT CHAIN 1, 3 |
| Ama32681 | |
| Ama32682 | |
| Ama32683 | ANGIOMOTIN |
| Ama32684 | |
| Ama32685 | |
| Ama32686 | VITELLOGENIN RECEPTOR-LIKE PROTEIN-RELATED-RELATED |
| Ama32687 | LD33804P |
| Ama32688 | INTEGRAL TRANSMEMBRANE PROTEIN 2 |
| Ama32689 |
