The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama32874 | |
| Ama32875 | PATCHED-RELATED |
| Ama32876 | L1 TRANSPOSABLE ELEMENT-RELATED |
| Ama32877 | PATCHED-RELATED |
| Ama32878 | PATCHED-RELATED |
| Ama32879 | |
| Ama32880 | PATCHED-RELATED |
| Ama32881 | |
| Ama32882 | |
| Ama32884 | TSC22 DOMAIN FAMILY PROTEIN 1 |
| Ama32885 | 60S RIBOSOMAL PROTEIN L35A |
| Ama32886 | DYNEIN REGULATORY COMPLEX PROTEIN 9 |
| Ama32887 | PROTEIN PHOSPHATASE |
| Ama32888 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
| Ama32889 | |
| Ama32890 | UNCHARACTERIZED |
| Ama32891 | |
| Ama32893 | TUMOR NECROSIS FACTOR FAMILY MEMBER |
| Ama32895 | TUMOR NECROSIS FACTOR FAMILY MEMBER |
| Ama32896 | |
| Ama328_5db7b01a | L1 TRANSPOSABLE ELEMENT-RELATED |
| Ama32914 | |
| Ama32916 | |
| Ama32917 | |
| Ama32918 | STEROID 17-ALPHA-HYDROXYLASE/17,20 LYASE |
| Ama32919 | |
| Ama32920 | UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED |
| Ama32921 | CARBOXYLASE:PYRUVATE/ACETYL-COA/PROPIONYL-COA CARBOXYLASE |
| Ama32922 | |
| Ama32923 | |
| Ama32924 | |
| Ama32925 | |
| Ama32926 | |
| Ama32927 | ATP-DEPENDENT DNA HELICASE |
| Ama32928 | TRANSMEMBRANE 9 SUPERFAMILY PROTEIN |
| Ama32929 | TRANSMEMBRANE 9 SUPERFAMILY PROTEIN |
| Ama32930 | METHIONYL-TRNA SYNTHETASE |
| Ama32931 | WD REPEAT-CONTAINING PROTEIN 53 |
| Ama32932 | HEPARAN SULFATE 6-O-SULFOTRANSFERASE 3 |
| Ama32933 | |
| Ama32937 | |
| Ama32938 | JITTERBUG, ISOFORM N |
| Ama32939 | |
| Ama32940 | |
| Ama32941 | HEPARAN SULFATE 6-O-SULFOTRANSFERASE 3 |
| Ama32942 | |
| Ama32943 | FIBRINOGEN/TENASCIN/ANGIOPOEITIN |
| Ama32944 | ENVOPLAKIN |
| Ama32946 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
| Ama32947 | LIPASE |
