The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama33030 | AAA-FAMILY ATPASE |
Ama33032 | SOX TRANSCRIPTION FACTOR |
Ama33034 | |
Ama33035 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
Ama33036 | FINGER PUTATIVE TRANSCRIPTION FACTOR FAMILY-RELATED |
Ama33037 | |
Ama33038 | UDP-GLUCOSE GLYCOPROTEIN:GLUCOSYLTRANSFERASE |
Ama33039 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Ama33040 | SRCR DOMAIN-CONTAINING PROTEIN |
Ama33041 | |
Ama33042 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama33046 | CRUMBS FAMILY MEMBER |
Ama33062 | SRCR DOMAIN-CONTAINING PROTEIN |
Ama33064 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
Ama33065 | SRCR DOMAIN-CONTAINING PROTEIN |
Ama33066 | SRCR DOMAIN-CONTAINING PROTEIN |
Ama33067 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Ama33068 | |
Ama33071 | SRCR DOMAIN-CONTAINING PROTEIN |
Ama33072 | |
Ama33073 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama33074 | SRCR DOMAIN-CONTAINING PROTEIN |
Ama33075 | |
Ama33076 | SRCR DOMAIN-CONTAINING PROTEIN |
Ama33077 | SRCR DOMAIN-CONTAINING PROTEIN |
Ama33078 | |
Ama33079 | PLASMINOGEN-RELATED |
Ama33080 | |
Ama33082 | PUTATIVE-RELATED |
Ama33083 | PUTATIVE-RELATED |
Ama33084 | TYROSINE-PROTEIN KINASE |
Ama33085 | STERILE20-LIKE KINASE, ISOFORM B-RELATED |
Ama33086 | |
Ama33087 | |
Ama33088 | HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED |
Ama33089 | THAP DOMAIN PROTEIN |
Ama33090 | THAP DOMAIN PROTEIN |
Ama33091 | |
Ama33092 | UNCHARACTERIZED |
Ama33093 | |
Ama33094 | |
Ama33095 | |
Ama33096 | |
Ama33097 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Ama33098 | AP ENDONUCLEASE |
Ama33099 | LEUCOKININ RECEPTOR-RELATED |
Ama330_5db7b01a | PEROXISOMAL MEMBRANE PROTEIN 2, PXMP2 MPV17 |
Ama33103 | TRANSPOSABLE ELEMENT-RELATED |
Ama33105 | LEUCOKININ RECEPTOR-RELATED |
Ama33110 |