The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama33490 | BONUS, ISOFORM C-RELATED |
Ama33491 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
Ama33492 | BONUS, ISOFORM C-RELATED |
Ama33494 | |
Ama33495 | TRANSPOSABLE ELEMENT-RELATED |
Ama33496 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
Ama33497 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama33498 | BONUS, ISOFORM C-RELATED |
Ama33499 | BONUS, ISOFORM C-RELATED |
Ama334_5db7b01a | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama33500 | PLATELET-ACTIVATING FACTOR ACETYLHYDROLASE |
Ama33501 | |
Ama33502 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama33503 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama33504 | MEIOSIS-SPECIFIC NUCLEAR STRUCTURAL PROTEIN 1 |
Ama33505 | MEIOSIS-SPECIFIC NUCLEAR STRUCTURAL PROTEIN 1 |
Ama33506 | |
Ama33507 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
Ama33508 | |
Ama33509 | |
Ama33510 | RHO GUANINE EXCHANGE FACTOR-RELATED |
Ama33511 | |
Ama33512 | |
Ama33513 | RHO GUANINE EXCHANGE FACTOR-RELATED |
Ama33514 | DOMAIN PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_5G04290)-RELATED |
Ama33515 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
Ama33516 | 5-HYDROXYTRYPTAMINE RECEPTOR |
Ama33517 | PROLINE-, GLUTAMIC ACID- AND LEUCINE-RICH PROTEIN 1 |
Ama33518 | RAS-RELATED PROTEIN RAB |
Ama33519 | SERINE/ARGININE REPETITIVE MATRIX PROTEIN 5-RELATED |
Ama33521 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
Ama33522 | TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED |
Ama33523 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
Ama33524 | |
Ama33525 | |
Ama33526 | ALMS1-RELATED |
Ama33529 | |
Ama33530 | |
Ama33531 | UNCHARACTERIZED |
Ama33532 | MONOCARBOXYLATE TRANSPORTER |
Ama33533 | LIPOMA HMGIC FUSION PARTNER-LIKE PROTEIN |
Ama33534 | DNA2/NAM7 HELICASE FAMILY |
Ama33535 | RHOMBOID-RELATED PROTEIN |
Ama33536 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama33537 | |
Ama33538 | DNA2/NAM7 HELICASE FAMILY |
Ama33539 | DNA2/NAM7 HELICASE FAMILY |
Ama33540 | DNA2/NAM7 HELICASE FAMILY |
Ama33541 | DNA2/NAM7 HELICASE FAMILY |
Ama33542 |