The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama33670 | THREE PRIME REPAIR EXONUCLEASE 1, 2 |
| Ama33671 | |
| Ama33674 | |
| Ama33675 | AMILORIDE-SENSITIVE SODIUM CHANNEL-RELATED |
| Ama33676 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| Ama33677 | LEUCOKININ RECEPTOR-RELATED |
| Ama33678 | LEUCOKININ RECEPTOR-RELATED |
| Ama33679 | THAP DOMAIN PROTEIN |
| Ama33680 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
| Ama33682 | ATP-DEPENDENT DNA HELICASE |
| Ama33684 | CYSTEINE PROTEASE ATG4 |
| Ama33686 | PROTEIN CBG10425 |
| Ama33687 | |
| Ama33689 | |
| Ama33690 | PROTEIN CBG10425 |
| Ama33691 | INHIBITOR OF APOPTOSIS |
| Ama33692 | |
| Ama33693 | MONOCARBOXYLATE TRANSPORTER |
| Ama33695 | UNCHARACTERIZED |
| Ama33696 | UNCHARACTERIZED |
| Ama33697 | |
| Ama33698 | UNCHARACTERIZED |
| Ama33699 | UNCHARACTERIZED |
| Ama336_5db7b01a | |
| Ama33701 | SULFOTRANSFERASE SULT |
| Ama33702 | RIBOFLAVIN TRANSPORTER RIBJ |
| Ama33703 | |
| Ama33704 | ZINC FINGER PROTEIN |
| Ama33705 | CULLIN |
| Ama33706 | MONOCARBOXYLATE TRANSPORTER |
| Ama33707 | |
| Ama33708 | |
| Ama33709 | PROTEIN CBG10425 |
| Ama33710 | |
| Ama33713 | |
| Ama33714 | INHIBITOR OF APOPTOSIS |
| Ama33715 | |
| Ama33716 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
| Ama33717 | |
| Ama33718 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C |
| Ama33719 | E3 UBIQUITIN-PROTEIN LIGASE TRIP12 |
| Ama33720 | E3 UBIQUITIN-PROTEIN LIGASE TRIP12 |
| Ama33721 | |
| Ama33722 | |
| Ama33723 | |
| Ama33724 | |
| Ama33725 | |
| Ama33726 | |
| Ama33727 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 70 |
| Ama33728 | BONUS, ISOFORM C-RELATED |
