The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama30487 | |
| Ama30489 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN |
| Ama30492 | MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN |
| Ama30493 | INHIBITOR OF APOPTOSIS |
| Ama30494 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
| Ama30497 | RAB GTPASE-ACTIVATING PROTEIN 1-LIKE |
| Ama30498 | ATP-DEPENDENT RNA AND DNA HELICASE |
| Ama30499 | |
| Ama304_5db7b01a | ADAM10/ADAM17 METALLOPEPTIDASE FAMILY MEMBER |
| Ama30500 | |
| Ama30502 | |
| Ama30503 | SWIM-TYPE DOMAIN-CONTAINING PROTEIN |
| Ama30504 | WD40 REPEAT PROTEIN |
| Ama30505 | 60S RIBOSOMAL PROTEIN L28 |
| Ama30507 | |
| Ama30508 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G |
| Ama30509 | PUTATIVE-RELATED |
| Ama30511 | CRUMBS FAMILY MEMBER |
| Ama30512 | |
| Ama30514 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Ama30515 | 30S 40S RIBOSOMAL PROTEIN |
| Ama30516 | |
| Ama30517 | BONUS, ISOFORM C-RELATED |
| Ama30520 | LUNG SEVEN TRANSMEMBRANE RECEPTOR |
| Ama30521 | I-KAPPA-B-LIKE PROTEIN IKBL |
| Ama30522 | CARBOHYDRATE SULFOTRANSFERASE |
| Ama30523 | |
| Ama30526 | UNCHARACTERIZED |
| Ama30527 | |
| Ama30528 | RIBOSOMAL PROTEIN L7AE FAMILY MEMBER |
| Ama30531 | HEAT SHOCK PROTEIN 70KDA |
| Ama30532 | HEAT SHOCK PROTEIN 70KDA |
| Ama30533 | |
| Ama30534 | SERYL-TRNA SYNTHETASE |
| Ama30535 | |
| Ama30536 | |
| Ama30538 | |
| Ama30539 | |
| Ama30540 | PROTEIN FAM78A |
| Ama30541 | NUCLEAR RECEPTOR SUBFAMILY 5 GROUP A |
| Ama30542 | |
| Ama30543 | PROTEASE S28 PRO-X CARBOXYPEPTIDASE-RELATED |
| Ama30544 | SAM-DEPENDENT METHYLTRANSFERASE SUPERFAMILY PROTEIN |
| Ama30546 | NEUROPEPTIDE RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Ama30547 | TUBULIN |
| Ama30548 | TUBULIN |
| Ama30549 | TUBULIN |
| Ama30550 | TUBULIN |
| Ama30551 | GLUTAREDOXIN-1 |
| Ama30552 |
