The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama30419 | |
| Ama30420 | |
| Ama30421 | |
| Ama30422 | |
| Ama30423 | |
| Ama30424 | |
| Ama30425 | |
| Ama30426 | |
| Ama30427 | |
| Ama30429 | COLLAGEN ALPHA |
| Ama30430 | |
| Ama30431 | BONUS, ISOFORM C-RELATED |
| Ama30432 | |
| Ama30433 | |
| Ama30435 | |
| Ama30436 | UNCHARACTERIZED |
| Ama30439 | LEUCINE ZIPPER PROTEIN 4-RELATED |
| Ama30442 | RIKEN CDNA 4933430I17 GENE |
| Ama30443 | SPECTRIN/FILAMIN RELATED CYTOSKELETAL PROTEIN |
| Ama30445 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Ama30446 | THREE PRIME REPAIR EXONUCLEASE 1, 2 |
| Ama30447 | GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE |
| Ama30448 | GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE |
| Ama30449 | |
| Ama30450 | GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE |
| Ama30451 | GROUP II PYRIDOXAL-5-PHOSPHATE DECARBOXYLASE |
| Ama30452 | ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 |
| Ama30453 | |
| Ama30454 | |
| Ama30455 | |
| Ama30456 | |
| Ama30457 | |
| Ama30458 | |
| Ama30460 | DOCKING PROTEIN RELATED |
| Ama30461 | |
| Ama30462 | DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 |
| Ama30463 | |
| Ama30464 | NEURAL PROLIFERATION DIFFERENTIATION AND CONTROL PROTEIN-1 NPDC-1 PROTEIN |
| Ama30467 | LAMIN DM0-RELATED |
| Ama30469 | LAMIN DM0-RELATED |
| Ama30471 | MORN REPEAT-CONTAINING PROTEIN 5 |
| Ama30472 | MONOCARBOXYLATE TRANSPORTER |
| Ama30473 | REVERSE TRANSCRIPTASES |
| Ama30474 | MONOCARBOXYLATE TRANSPORTER |
| Ama30475 | CARBOHYDRATE SULFOTRANSFERASE |
| Ama30477 | |
| Ama30481 | DEOXYRIBONUCLEASE TATDN2-RELATED |
| Ama30482 | |
| Ama30483 | |
| Ama30484 |
