About Archivesica marissinica

The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Archivesica marissinicaMolluscaDeep-Sea ClamHydrothermal vent1,361Haima cold seep in the South China Sea2291877

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM1484369v11.5GbChromosome2020JABXNX01Hong Kong Baptist UniversityPRJNA62989893.50%28,949

References
TitleJournalPubmed ID
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic ClamMolecular Biology and Evolution32956455

Gene Information

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Gene IDDescription
Ama30302REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Ama30303PAIRED BOX PROTEIN PAX-6-RELATED-RELATED
Ama30304HOMEOBOX PROTEIN ARISTALESS
Ama30305UPF0315 PROTEIN-RELATED
Ama30306DNA-DIRECTED RNA POLYMERASE
Ama30307
Ama30308
Ama30309UPF0315 PROTEIN-RELATED
Ama30310DNA-DIRECTED RNA POLYMERASE
Ama30311INOSITOL POLYPHOSPHATE 5-PHOSPHATASE E
Ama30312
Ama30313TB1 PROTEIN-RELATED
Ama30314SORBITOL DEHYDROGENASE
Ama30315SORBITOL DEHYDROGENASE
Ama30316PUTATIVE-RELATED
Ama30317QUEUINE TRNA-RIBOSYLTRANSFERASE CATALYTIC SUBUNIT 1
Ama30318PHYTANOYL-COA DIOXYGENASE DOMAIN CONTAINING 1
Ama30319GEM-ASSOCIATED PROTEIN 4
Ama30321OLIGORIBONUCLEASE, MITOCHONDRIAL
Ama30322FI14130P
Ama30323UPF0184 PROTEIN C9ORF16
Ama30324ATP-DEPENDENT RNA HELICASE DBP3
Ama30325
Ama30327
Ama30328
Ama30329
Ama30330LD22376P
Ama30331SURFEIT LOCUS PROTEIN 6
Ama30332SOLUTE CARRIER FAMILY 25
Ama30334ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED
Ama30335ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4
Ama30336DNA REPLICATION-RELATED ELEMENT FACTOR, ISOFORM A
Ama30337SURFEIT LOCUS PROTEIN
Ama30338
Ama30339
Ama30340
Ama30341UNCHARACTERIZED
Ama30343LIM/HOMEOBOX PROTEIN LHX
Ama30344RIBOSOMAL PROTEIN L39E
Ama30347
Ama30348BONUS, ISOFORM C-RELATED
Ama30349F-BOX/WD REPEAT-CONTAINING PROTEIN 5
Ama30350XENOTROPIC AND POLYTROPIC RETROVIRUS RECEPTOR 1-RELATED
Ama30351BAND 7 PROTEIN-RELATED
Ama30352BAND 7 PROTEIN-RELATED
Ama30353BAND 7 PROTEIN-RELATED
Ama30355CAT EYE SYNDROME CRITICAL REGION PROTEIN 6
Ama30356TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN
Ama30357TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN
Ama30358PROSTAGLANDIN G/H SYNTHASE
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