About Archivesica marissinica

The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Archivesica marissinicaMolluscaDeep-Sea ClamHydrothermal vent1,361Haima cold seep in the South China Sea2291877

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM1484369v11.5GbChromosome2020JABXNX01Hong Kong Baptist UniversityPRJNA62989893.50%28,949

References
TitleJournalPubmed ID
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic ClamMolecular Biology and Evolution32956455

Gene Information

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Gene IDDescription
Ama29987
Ama29989-
Ama29991CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44)
Ama29994DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
Ama29995DISCOIDIN, CUB, EGF, LAMININ , AND ZINC METALLOPROTEASE DOMAIN CONTAINING
Ama29996SI:CH211-201H21.5-RELATED
Ama29999SLEI FAMILY PROTEIN
Ama299_5db7b01aRAD, GEM/KIR FAMILY MEMBER 2, ISOFORM C
Ama2_5db7b01a
Ama30001PROTEASOME SUBUNIT ALPHA/BETA
Ama30003AMINO ACID TRANSPORTER
Ama30004BAT2 HLA-B-ASSOCIATED TRANSCRIPT 2
Ama30006PROTEIN C10
Ama30007SERINE/THREONINE-PROTEIN KINASE
Ama30009
Ama30010NETRIN/LAMININ-RELATED
Ama30011KUNITZ-TYPE PROTEASE INHIBITOR-RELATED
Ama30013
Ama30014KUNITZ-TYPE PROTEASE INHIBITOR-RELATED
Ama30015
Ama30018
Ama30020UBIQUITIN-ASSOCIATED DOMAIN-CONTAINING PROTEIN 1
Ama30021UBIQUITIN-ASSOCIATED DOMAIN-CONTAINING PROTEIN 1
Ama30022
Ama30023
Ama30024ZINC FINGER CCCH-TYPE WITH G PATCH DOMAIN-CONTAINING PROTEIN
Ama30025
Ama30026UNCHARACTERIZED
Ama30027SPERMATID WD-REPEAT PROTEIN
Ama30029NUCLEAR HORMONE RECEPTOR
Ama30030
Ama30031
Ama30032LD33804P
Ama30033FMRFAMIDE RECEPTOR-RELATED
Ama30034
Ama30035SULFOTRANSFERASE SULT
Ama30036SUSHI DOMAIN-CONTAINING PROTEIN
Ama30038LEUCINE-RICH REPEAT-CONTAINING PROTEIN 51
Ama30039WD40 REPEAT PROTEIN
Ama30040NEUROTRANSMITTER GATED ION CHANNEL
Ama30041
Ama30042
Ama30043
Ama30045
Ama30046
Ama30047HOMEOBOX PROTEIN ARISTALESS
Ama30048BETA1,3-GALACTOSYLTRANSFERASE
Ama30049CASEIN KINASE II SUBUNIT BETA
Ama30050METALLOPROTEASE TLDD
Ama30051CORTACTIN AND DREBRIN
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