The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama29537 | THAP DOMAIN PROTEIN |
| Ama29538 | |
| Ama29539 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
| Ama29540 | |
| Ama29541 | |
| Ama29542 | PROTEIN DISPATCHED-RELATED |
| Ama29543 | PROTEIN DISPATCHED-RELATED |
| Ama29545 | |
| Ama29546 | |
| Ama29547 | |
| Ama29548 | PROTEIN DISPATCHED-RELATED |
| Ama29550 | PROTEIN DISPATCHED-RELATED |
| Ama29551 | MATING RESPONSE PROTEIN POI2 |
| Ama29552 | TETRASPANIN |
| Ama29553 | TETRASPANIN |
| Ama29554 | ARMADILLO REPEAT-CONTAINING PROTEIN 4 ARMC4 |
| Ama29557 | ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN |
| Ama29558 | RNA LARIAT DEBRANCHING ENZYME |
| Ama29559 | |
| Ama29560 | |
| Ama29561 | ENDOPLASMIC RETICULUM RESIDENT PROTEIN 44 |
| Ama29562 | CADHERIN-23 |
| Ama29563 | OPSIN |
| Ama29564 | |
| Ama29565 | OPSIN |
| Ama29567 | REVERSE TRANSCRIPTASES |
| Ama29569 | EXPRESSED PROTEIN |
| Ama29570 | |
| Ama29571 | EXPRESSED PROTEIN |
| Ama29572 | |
| Ama29573 | DNA POLYMERASE |
| Ama29574 | DNA POLYMERASE |
| Ama29575 | |
| Ama29581 | METHIONYL-TRNA FORMYLTRANSFERASE |
| Ama29583 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
| Ama29584 | INHIBITOR OF APOPTOSIS |
| Ama29585 | |
| Ama29586 | |
| Ama29587 | NF-KAPPA-B INHIBITOR ALPHA |
| Ama29588 | ANKYRIN REPEAT FAMILY PROTEIN |
| Ama29589 | NF-KAPPA-B INHIBITOR ALPHA |
| Ama29591 | |
| Ama29592 | ANKYRIN REPEAT FAMILY PROTEIN |
| Ama29594 | CADHERIN-23 |
| Ama29595 | |
| Ama29596 | |
| Ama29597 | CADHERIN-23 |
| Ama29598 | DNA POLYMERASE |
| Ama29599 | DNA POLYMERASE |
| Ama295_5db7b01a | SULFOTRANSFERASE SULT |
