The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama29722 | SERINE/THREONINE-PROTEIN PHOSPHATASE 2A REGULATORY SUBUNIT B |
Ama29723 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
Ama29724 | SI:CH211-262H13.3-RELATED-RELATED |
Ama29725 | SI:CH211-262H13.3-RELATED-RELATED |
Ama29728 | MUCIN-22 |
Ama29734 | |
Ama29735 | LEUCINE-ZIPPER-LIKE TRANSCRIPTIONAL REGULATOR 1 |
Ama29736 | |
Ama29737 | UNCHARACTERIZED |
Ama29738 | ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 5 |
Ama29740 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
Ama29741 | |
Ama29742 | |
Ama29743 | RGPR-RELATED |
Ama29745 | |
Ama29748 | ATP-DEPENDENT DNA HELICASE |
Ama29749 | THAP DOMAIN PROTEIN |
Ama29751 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
Ama29752 | 39S RIBOSOMAL PROTEIN L14, MITOCHONDRIAL |
Ama29756 | L1 TRANSPOSABLE ELEMENT-RELATED |
Ama29757 | |
Ama29758 | - |
Ama29759 | - |
Ama29763 | HEPARAN SULFATE SULFOTRANSFERASE |
Ama29764 | CDK5 REGULATORY SUBUNIT-ASSOCIATED PROTEIN 2 |
Ama29765 | ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4 |
Ama29767 | CENTROSOMAL PROTEIN 2 |
Ama29769 | LATROPHILIN RECEPTOR-LIKE PROTEIN A |
Ama29770 | - |
Ama29771 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
Ama29773 | LATROPHILIN RECEPTOR-LIKE PROTEIN A |
Ama29775 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
Ama29776 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama29777 | ZINC FINGER DHHC DOMAIN CONTAINING PROTEIN |
Ama29779 | |
Ama29780 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
Ama29781 | FOLLISTATIN-RELATED |
Ama29782 | VESICLE PROTEIN SORTING-ASSOCIATED |
Ama29783 | |
Ama29784 | NITROGEN METABOLITE REPRESSION PROTEIN NMRA FAMILY MEMBER |
Ama29786 | DENN DOMAIN-CONTAINING |
Ama29787 | |
Ama29790 | CENTROSOME-ASSOCIATED PROTEIN 350 |
Ama29791 | CENTROSOME-ASSOCIATED PROTEIN 350 |
Ama29792 | CENTROSOME-ASSOCIATED PROTEIN 350 |
Ama29793 | CENTROSOME-ASSOCIATED PROTEIN 350 |
Ama29794 | LONG-CHAIN-FATTY-ACID--COA LIGASE |
Ama29795 | |
Ama29797 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
Ama29799 | PUTATIVE PHOSPHOTRANSFERASE |