The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama27_5db84494 | SWI/SNF-RELATED |
Ama28000 | |
Ama28001 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
Ama28007 | UNCHARACTERIZED |
Ama28014 | |
Ama28015 | |
Ama28016 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
Ama28019 | G-PROTEIN COUPLED RECEPTOR |
Ama28020 | THAP DOMAIN PROTEIN |
Ama28021 | |
Ama28022 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
Ama28023 | |
Ama28024 | |
Ama28028 | INHIBITOR OF APOPTOSIS |
Ama28029 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
Ama28030 | TRANSPOSON |
Ama28031 | |
Ama28034 | |
Ama28035 | |
Ama28036 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Ama28037 | G-PROTEIN COUPLED RECEPTOR |
Ama28038 | |
Ama28039 | |
Ama28044 | |
Ama28046 | |
Ama28051 | |
Ama28054 | |
Ama28056 | TOLL-LIKE RECEPTOR |
Ama28058 | WD-REPEAT PROTEIN BING4 |
Ama28059 | PCD6 INTERACTING PROTEIN-RELATED |
Ama28062 | ZGC:162816-RELATED |
Ama28063 | UNCHARACTERIZED |
Ama28064 | ANION EXCHANGE PROTEIN |
Ama28066 | |
Ama28067 | WW DOMAIN-CONTAINING ADAPTER PROTEIN WITH COILED-COIL |
Ama28068 | LEUCINE ZIPPER-EF-HAND CONTAINING TRANSMEMBRANE PROTEIN |
Ama28069 | |
Ama28071 | |
Ama28073 | NUCLEAR HORMONE RECEPTOR |
Ama28074 | IMMUNOGLOBULIN |
Ama28075 | MICROFIBRIL-ASSOCIATED GLYCOPROTEIN 3 |
Ama28076 | IMMUNOGLOBULIN |
Ama28077 | IMMUNOGLOBULIN |
Ama28078 | MICROFIBRIL-ASSOCIATED GLYCOPROTEIN 3 |
Ama28079 | MICROFIBRIL-ASSOCIATED GLYCOPROTEIN 3 |
Ama28080 | MICROFIBRIL-ASSOCIATED GLYCOPROTEIN 3 |
Ama28081 | ZINC FINGER PROTEIN |
Ama28082 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
Ama28083 | |
Ama28084 | MICROFIBRIL-ASSOCIATED GLYCOPROTEIN 3 |