The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama27755 | E3 UBIQUITIN-PROTEIN LIGASE KCMF1 |
Ama27756 | DIHYDROPTERIDINE REDUCTASE |
Ama27757 | GDP-FUCOSE PROTEIN O-FUCOSYLTRANSFERASE 2 |
Ama27758 | |
Ama27759 | |
Ama27762 | STAR-RELATED LIPID TRANSFER PROTEIN 9 |
Ama27764 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama27765 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
Ama27766 | TUDOR DOMAIN CONTAINING PROTEIN |
Ama27767 | T-BOX PROTEIN-RELATED |
Ama27770 | LIM DOMAIN-BINDING PROTEIN |
Ama27771 | ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4 |
Ama27772 | |
Ama27773 | - |
Ama27774 | PANTOTHENATE KINASE |
Ama27775 | PROTEIN FAM45A-RELATED |
Ama27776 | |
Ama27777 | PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN |
Ama27780 | |
Ama27781 | |
Ama27782 | ANILLIN/RHOTEKIN RTKN |
Ama27783 | |
Ama27784 | ZINC FINGER PROTEIN |
Ama27785 | RIBOSE-5-PHOSPHATE ISOMERASE |
Ama27786 | NITRIC OXIDE-ASSOCIATED PROTEIN 1 |
Ama27787 | GRPE PROTEIN |
Ama27788 | THAP DOMAIN PROTEIN |
Ama27789 | EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN |
Ama27790 | LRP2-BINDING PROTEIN |
Ama27791 | DUF3504 DOMAIN-CONTAINING PROTEIN |
Ama27792 | KRAB AND ZINC FINGER DOMAIN-CONTAINING |
Ama27793 | URACIL-DNA GLYCOSYLASE |
Ama27794 | OLIGORIBONUCLEASE, MITOCHONDRIAL |
Ama27796 | GOLGI AUTOANTIGEN, GOLGIN SUBFAMILY A, 7 |
Ama27797 | |
Ama27798 | PROTEIN CBG10425 |
Ama27799 | RING FINGER DOMAIN-CONTAINING |
Ama277_5db7b01a | PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER |
Ama27800 | AGAP001331-PA-RELATED |
Ama27801 | UNCHARACTERIZED |
Ama27802 | |
Ama27803 | |
Ama27804 | |
Ama27805 | TRANSPOSON |
Ama27806 | TRANSPOSON |
Ama27807 | |
Ama27809 | TRANSPOSON |
Ama27810 | CHROMATE REDUCTASE |
Ama27811 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama27812 | WD40 REPEAT PF20 |