About Archivesica marissinica

The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Archivesica marissinicaMolluscaDeep-Sea ClamHydrothermal vent1,361Haima cold seep in the South China Sea2291877

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM1484369v11.5GbChromosome2020JABXNX01Hong Kong Baptist UniversityPRJNA62989893.50%28,949

References
TitleJournalPubmed ID
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic ClamMolecular Biology and Evolution32956455

Gene Information

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Gene IDDescription
Ama27626ACTIN
Ama27627-
Ama27628TRANSPORTER
Ama27629CALCIUM BINDING PROTEIN
Ama27630
Ama27631NEUROTRANSMITTER GATED ION CHANNEL
Ama27632DNA POLYMERASE TYPE-X FAMILY MEMBER
Ama27633DNA POLYMERASE TYPE-X FAMILY MEMBER
Ama27634FATTY ACID DESATURASE 2
Ama27635ANKYRIN REPEAT PROTEIN
Ama27636MATRIX METALLOPROTEINASE
Ama27637
Ama27638ALLANTOICASE
Ama27639HOMEOBOX PROTEIN NKX
Ama27640
Ama27641ENDONUCLEASE-RELATED
Ama27642UNCHARACTERIZED
Ama27643THO COMPLEX SUBUNIT 3 THO3
Ama27644
Ama27646RAI16 PROTEIN-RELATED
Ama27647
Ama276484-HYDROXYPHENYLPYRUVATE DIOXYGENASE
Ama27649
Ama27650PROTEIN CBG26694
Ama27651DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED
Ama27652LATERAL SIGNALING TARGET PROTEIN 2 HOMOLOG
Ama27653
Ama27654LATERAL SIGNALING TARGET PROTEIN 2 HOMOLOG
Ama27655DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED
Ama27656
Ama27657CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR
Ama27658PARP/ZINC FINGER CCCH TYPE DOMAIN CONTAINING PROTEIN
Ama27659PROLINE SYNTHETASE CO-TRANSCRIBED BACTERIAL HOMOLOG PROTEIN
Ama27660PALMITOYLTRANSFERASE ZDHHC16
Ama27661SERINE/THREONINE-PROTEIN KINASE PLK
Ama27664PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT
Ama27667SERINE/THREONINE-PROTEIN KINASE PIM
Ama27669KUNITZ-TYPE PROTEASE INHIBITOR-RELATED
Ama27673PROTEIN TINCAR
Ama27674REGULATOR OF G-PROTEIN SIGNALING LOCO
Ama27675
Ama27677REGULATOR OF G-PROTEIN SIGNALING LOCO
Ama27678DEOXYRIBONUCLEASE TATDN2-RELATED
Ama27679
Ama27680PROTEIN CBG10425
Ama27681
Ama27682NUCLEOLAR PROTEIN 5 NUCLEOLAR PROTEIN NOP5 NOP58
Ama27684EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Ama27686UNCHARACTERIZED
Ama27687
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