The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama27263 | BCDNA.GH03377 |
| Ama27264 | TRANSMEMBRANE PROTEIN 143 FAMILY MEMBER |
| Ama27265 | DEOXYNUCLEOSIDE KINASE |
| Ama27266 | |
| Ama27267 | |
| Ama27268 | |
| Ama27269 | |
| Ama27270 | |
| Ama27271 | |
| Ama27272 | |
| Ama27273 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
| Ama27274 | INHIBITOR OF APOPTOSIS |
| Ama27275 | TATA-BOX BINDING PROTEIN |
| Ama27276 | |
| Ama27277 | |
| Ama27278 | |
| Ama27279 | |
| Ama27280 | TRANSPOSON |
| Ama27282 | |
| Ama27283 | KINESIN-LIKE PROTEIN KIF11 |
| Ama27285 | |
| Ama27288 | G-PROTEIN COUPLED RECEPTOR 124-LIKE PROTEIN |
| Ama27290 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Ama27291 | |
| Ama27292 | EPSIN/ENT-RELATED |
| Ama27294 | |
| Ama27295 | |
| Ama27296 | GENERAL TRANSCRIPTION FACTOR 2-RELATED ZINC FINGER PROTEIN |
| Ama27297 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Ama27299 | |
| Ama27300 | UNCHARACTERIZED |
| Ama27301 | 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 4 |
| Ama27302 | NEUROTRANSMITTER GATED ION CHANNEL |
| Ama27303 | NEUROTRANSMITTER GATED ION CHANNEL |
| Ama27304 | HELICASE WITH DEATH DOMAIN-RELATED |
| Ama27313 | |
| Ama27314 | PUTATIVE-RELATED |
| Ama27315 | EXPORTIN 4,7-RELATED |
| Ama27316 | |
| Ama27320 | EXPORTIN 4,7-RELATED |
| Ama27321 | XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER |
| Ama27322 | XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER |
| Ama27324 | SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 9C |
| Ama27327 | TRANSPOSON |
| Ama27328 | |
| Ama27329 | ULP_PROTEASE DOMAIN-CONTAINING PROTEIN |
| Ama27330 | UNCHARACTERIZED |
| Ama27332 | |
| Ama27333 | ZINC FINGER PROTEIN |
| Ama27335 | LEUCINE ZIPPER-EF-HAND CONTAINING TRANSMEMBRANE PROTEIN |
