About Archivesica marissinica

The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Archivesica marissinicaMolluscaDeep-Sea ClamHydrothermal vent1,361Haima cold seep in the South China Sea2291877

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completenessGene Number
ASM1484369v11.5GbChromosome2020JABXNX01Hong Kong Baptist UniversityPRJNA62989893.50%28,949

References
TitleJournalPubmed ID
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic ClamMolecular Biology and Evolution32956455

Gene Information

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Gene IDDescription
Ama27174PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN
Ama27175REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN
Ama27176
Ama27178
Ama27181
Ama27182
Ama27190
Ama27194TYROSINE-PROTEIN KINASE RECEPTOR
Ama271965'-NUCLEOTIDASE DOMAIN-CONTAINING
Ama271985'-NUCLEOTIDASE DOMAIN-CONTAINING
Ama27199
Ama271_5db7b01aSTEREOCILIN RELATED
Ama27200MYOTROPHIN
Ama27201GROWTH INHIBITION AND DIFFERENTIATION RELATED PROTEIN 88
Ama27204SAM DOMAIN-CONTAINING PROTEIN-RELATED
Ama27205MYOSIN HEAVY CHAIN, NON-MUSCLE
Ama27210UBIQUITIN THIOESTERASE
Ama27211PROTEIN FAM204A
Ama27212HOMEOBOX PROTEIN HMX
Ama27213ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED
Ama27214
Ama27215ALPHA-(1,3)-FUCOSYLTRANSFERASE C-RELATED
Ama27216HISTIDINE AMMONIA-LYASE
Ama27217UNCHARACTERIZED
Ama27218G PROTEIN-COUPLED RECEPTOR 157-RELATED
Ama27222FIBRONECTIN TYPE-III DOMAIN-CONTAINING PROTEIN-RELATED
Ama27223SUPRABASAL-SPECIFIC PROTEIN SUPRABASIN
Ama27230MATRIX METALLOPROTEINASE
Ama27231EXONUCLEASE, PHAGE-TYPE/RECB, C-TERMINAL DOMAIN-CONTAINING PROTEIN
Ama27232THAP DOMAIN PROTEIN
Ama27233CXC DOMAIN-CONTAINING PROTEIN-RELATED
Ama27236
Ama27237
Ama27238TRANSPOSON
Ama27243
Ama27244FER-1-LIKE
Ama27245ENDO/EXONUCLEASE/PHOSPHATASE DOMAIN-CONTAINING PROTEIN
Ama27247UNCHARACTERIZED
Ama27248UBIQUITIN-LIKE DOMAIN-CONTAINING CTD PHOSPHATASE 1
Ama27250UNCHARACTERIZED
Ama27251
Ama27253UNCHARACTERIZED
Ama27255UNCHARACTERIZED
Ama27256CXC DOMAIN-CONTAINING PROTEIN-RELATED
Ama27257
Ama27258HAT FAMILY DIMERISATION DOMAINCONTAINING PROTEIN-RELATED
Ama27259COPPER HOMEOSTASIS PROTEIN CUTC
Ama27260
Ama27261PHOSPHOGLYCERATE MUTASE
Ama27262
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