The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama26971 | TRANSFORMING ACIDIC COILED-COIL CONTAINING PROTEIN 1/2 |
| Ama26972 | NUP107-RELATED |
| Ama26973 | BNAC05G24000D PROTEIN |
| Ama26975 | |
| Ama26976 | NEURALIZED |
| Ama26980 | PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED |
| Ama26982 | PHOSPHATIDYLINOSITOL-GLYCAN BIOSYNTHESIS CLASS F PROTEIN-RELATED |
| Ama26983 | TRANSMEMBRANE EMP24 DOMAIN-CONTAINING PROTEIN |
| Ama26984 | UNCHARACTERIZED |
| Ama26985 | |
| Ama26988 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Ama26989 | TRANSCRIPTION TERMINATION FACTOR 2-RELATED |
| Ama26990 | |
| Ama26991 | UNCHARACTERIZED |
| Ama26992 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Ama26993 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Ama26994 | |
| Ama26995 | CHARGED MULTIVESICULAR BODY PROTEIN |
| Ama26997 | |
| Ama26998 | GLYCOGEN PHOSPHORYLASE |
| Ama26999 | |
| Ama27000 | |
| Ama27001 | NEUROPHYSIN |
| Ama27002 | |
| Ama27004 | SIMILAR TO RIKEN CDNA E130308A19 |
| Ama27006 | |
| Ama27007 | |
| Ama27009 | |
| Ama27012 | AP-5 COMPLEX SUBUNIT SIGMA-1 |
| Ama27013 | |
| Ama27014 | |
| Ama27015 | DACTYLIN |
| Ama27021 | MUCOSA ASSOCIATED LYMPHOID TISSUE LYMPHOMA TRANSLOCATION PROTEIN 1/PARACASPASE |
| Ama27022 | PROTEIN CBG22215 |
| Ama27023 | |
| Ama27024 | SPHINGOLIPID DELTA 4 DESATURASE/C-4 HYDROXYLASE PROTEIN DES2 |
| Ama27025 | |
| Ama27026 | PHYTOENE DEHYDROGENASE |
| Ama27027 | |
| Ama27028 | |
| Ama27029 | NEUROPEPTIDE Y RECEPTOR |
| Ama27030 | UNCHARACTERIZED |
| Ama27031 | PROFILIN |
| Ama27032 | |
| Ama27033 | - |
| Ama27034 | ANAPHASE PROMOTING COMPLEX SUBUNIT 4 APC4 |
| Ama27035 | RHO GTPASE ACTIVATING PROTEIN 18,19-RELATED |
| Ama27036 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
| Ama27037 | |
| Ama27038 | MAJOR FACILITATOR SUPERFAMILY PROTEIN-RELATED |
