The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama26590 | PEROXISOME ASSEMBLY PROTEIN 26 |
| Ama26591 | |
| Ama26592 | TYPE I INOSITOL-1,4,5-TRISPHOSPHATE 5-PHOSPHATASE |
| Ama26593 | |
| Ama26595 | - |
| Ama26596 | RCC1 DOMAIN-CONTAINING PROTEIN 1 |
| Ama26597 | ZINC FINGER PROTEIN 142 |
| Ama26598 | MSF1/PX19 RELATED |
| Ama265_5db7b01a | |
| Ama26600 | GLYCOSYL HYDROLASE DIGH |
| Ama26601 | MSF1/PX19 RELATED |
| Ama26602 | |
| Ama26603 | MSF1/PX19 RELATED |
| Ama26604 | |
| Ama26605 | GLYCOSYL HYDROLASE DIGH |
| Ama26606 | |
| Ama26607 | XANTHINE-URACIL / VITAMIN C PERMEASE FAMILY MEMBER |
| Ama26608 | CYTOCHROME P450 26 |
| Ama26609 | |
| Ama26610 | |
| Ama26611 | PROTEIN CBG23764 |
| Ama26612 | ZINC FINGER PROTEIN |
| Ama26613 | |
| Ama26614 | CYTOCHROME P450 26 |
| Ama26615 | |
| Ama26616 | |
| Ama26617 | |
| Ama26618 | |
| Ama26619 | BETA-1,2-N-ACETYLGLUCOSAMINYLTRANSFERASE II |
| Ama26620 | STABILIZER OF AXONEMAL MICROTUBULES 2 |
| Ama26622 | ANKYRIN REPEAT FAMILY PROTEIN |
| Ama26623 | |
| Ama26624 | |
| Ama26625 | MULTI-COPPER OXIDASE |
| Ama26627 | NF-KAPPA-B INHIBITOR ALPHA |
| Ama26629 | 5-HYDROXYTRYPTAMINE RECEPTOR |
| Ama26630 | |
| Ama26633 | |
| Ama26634 | |
| Ama26635 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Ama26636 | ALPHA KINASE/ELONGATION FACTOR 2 KINASE |
| Ama26637 | |
| Ama26638 | CASPASE |
| Ama26639 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 |
| Ama26645 | TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED |
| Ama26646 | |
| Ama26647 | |
| Ama26648 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
| Ama26650 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
| Ama26651 | DUAL SPECIFICITY PROTEIN PHOSPHATASE |
