The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama26502 | |
| Ama26503 | SHOOTIN-1 |
| Ama26504 | COMM DOMAIN CONTAINING PROTEIN 10 |
| Ama26505 | 30S RIBOSOMAL PROTEIN S16 |
| Ama26506 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Ama26507 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
| Ama26508 | RING FINGER PROTEIN 37 |
| Ama26509 | RING-H2 FINGER PROTEIN ATL51-RELATED |
| Ama26511 | MESENCHYME-SPECIFIC CELL SURFACE GLYCOPROTEIN |
| Ama26512 | HOMEOBOX PROTEIN NKX |
| Ama26520 | OXIDASE/PEROXIDASE |
| Ama26521 | SURFACE ANTIGEN BSPA-LIKE-RELATED |
| Ama26522 | ADRENERGIC RECEPTOR-RELATED G-PROTEIN COUPLED RECEPTOR |
| Ama26523 | |
| Ama26525 | |
| Ama26526 | |
| Ama26527 | ZINC KNUCKLE DOMAINCONTAINING PROTEIN-RELATED |
| Ama26528 | |
| Ama26529 | |
| Ama26532 | L-CYSTEINE DESULFHYDRASE |
| Ama26535 | HOMEOBOX PROTEIN HHEX |
| Ama26536 | |
| Ama26537 | |
| Ama26538 | TOLL-LIKE RECEPTOR |
| Ama26539 | |
| Ama26540 | TOLL-LIKE RECEPTOR |
| Ama26542 | |
| Ama26543 | TOLL-LIKE RECEPTOR |
| Ama26545 | |
| Ama26546 | |
| Ama26547 | |
| Ama26548 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Ama26549 | TRANSCRIPTIONAL REPRESSOR CTCFL-RELATED |
| Ama26551 | ZINC FINGER PROTEIN |
| Ama26552 | |
| Ama26554 | |
| Ama26556 | CTX-RELATED TYPE I TRANSMEMBRANE PROTEIN |
| Ama26558 | |
| Ama26560 | |
| Ama26562 | |
| Ama26565 | |
| Ama26566 | |
| Ama26567 | - |
| Ama26574 | DEDICATOR OF CYTOKINESIS |
| Ama26575 | |
| Ama26579 | METAXIN RELATED |
| Ama26580 | |
| Ama26581 | EQUILIBRATIVE NUCLEOSIDE TRANSPORTER |
| Ama26582 | DUAL SPECIFICITY PROTEIN PHOSPHATASE |
| Ama26588 |
