The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama27688 | SOLUTE CARRIER FAMILY 13 MEMBER |
Ama27691 | |
Ama27692 | MACROPHAGE ERYTHROBLAST ATTACHER-RELATED |
Ama27693 | |
Ama27694 | 52 KDA REPRESSOR OF THE INHIBITOR OF THE PROTEIN KINASE-LIKE PROTEIN-RELATED |
Ama27695 | ZINC FINGER PROTEIN |
Ama27696 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 46 |
Ama27697 | MAJOR VAULT PROTEIN |
Ama27698 | L-SERYL-TRNA(SEC) KINASE |
Ama27699 | PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 |
Ama276_5db7b01a | GLYCOSYLTRANSFERASE |
Ama27700 | PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1 |
Ama27701 | |
Ama27702 | CYANOPHYCINASE |
Ama27704 | |
Ama27706 | TRANSCRIPTION FACTOR LBX |
Ama27707 | ALPHA-L-IDURONIDASE |
Ama27708 | CTCL TUMOR ANTIGEN HD-CL-01 |
Ama27709 | |
Ama27710 | |
Ama27711 | |
Ama27712 | TUDOR DOMAIN CONTAINING PROTEIN |
Ama27713 | TUDOR DOMAIN CONTAINING PROTEIN |
Ama27714 | ATP-DEPENDENT DNA HELICASE |
Ama27715 | THAP DOMAIN PROTEIN |
Ama27716 | |
Ama27717 | DNA-DIRECTED RNA POLYMERASES I, II, AND III SUBUNIT RPABC2 |
Ama27718 | GLYCEROL-3-PHOSPHATE ACYLTRANSFERASE |
Ama27719 | POLYCOMB GROUP RING FINGER PROTEIN |
Ama27720 | HEPARANASE |
Ama27721 | POLYCOMB GROUP RING FINGER PROTEIN |
Ama27723 | |
Ama27724 | TRANSFORMING ACIDIC COILED-COIL CONTAINING PROTEIN 1/2 |
Ama27725 | SH3-BINDING |
Ama27726 | |
Ama27728 | NICOTINAMIDE MONONUCLEOTIDE ADENYLYLTRANSFERASE |
Ama27733 | HILLARIN |
Ama27734 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama27735 | HILLARIN |
Ama27736 | 5-HYDROXYTRYPTAMINE RECEPTOR |
Ama27737 | HOMEOBOX PROTEIN HMX |
Ama27739 | ACYL-COA DEHYDROGENASE |
Ama27740 | CASPASE RECRUITMENT DOMAIN-CONTAINING PROTEIN 18 |
Ama27741 | INSULIN-LIKE PEPTIDE 2-RELATED |
Ama27742 | |
Ama27745 | COMPLEXIN |
Ama27751 | CASPASE REGULATOR, RING FINGER DOMAIN-CONTAINING |
Ama27752 | PROTEASE-ASSOCIATED DOMAIN-CONTAINING PROTEIN |
Ama27753 | 60S RIBOSOMAL PROTEIN L26 FAMILY MEMBER |
Ama27754 | U4/U6.U5 SMALL NUCLEAR RIBONUCLEOPROTEIN 27 KDA PROTEIN |