The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama27877 | |
| Ama27879 | |
| Ama27881 | |
| Ama27884 | |
| Ama27885 | IDURONATE 2-SULFATASE |
| Ama27886 | BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE |
| Ama27887 | ETS |
| Ama27888 | THREONINE SYNTHASE FAMILY MEMBER |
| Ama27889 | TRANSMEMBRANE PROTEIN 127 |
| Ama27890 | CASEIN KINASE-RELATED |
| Ama27891 | NUCLEAR HORMONE RECEPTOR |
| Ama27893 | MITOCHONDRIA-EATING PROTEIN-RELATED |
| Ama27894 | CONTACTIN 5 |
| Ama27895 | ZINC FINGER AND SCAN DOMAIN-CONTAINING |
| Ama27896 | HERMANSKY-PUDLAK SYNDROME PROTEIN 1 |
| Ama27897 | SUCCINYL-COA LIGASE SUBUNIT ALPHA |
| Ama27898 | |
| Ama27899 | HEXOKINASE |
| Ama278_5db7b01a | |
| Ama27900 | PROTEIN CBG23764 |
| Ama27901 | PROTEIN CBG23764 |
| Ama27902 | |
| Ama27903 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
| Ama27904 | ANCIENT UBIQUITOUS PROTEIN |
| Ama27905 | HEXOKINASE |
| Ama27906 | SPORE COAT PROTEIN SP85 |
| Ama27907 | UNCHARACTERIZED |
| Ama27908 | UNCHARACTERIZED |
| Ama27909 | HVA22-LIKE PROTEINS |
| Ama27911 | SI:CH211-108C17.2-RELATED-RELATED |
| Ama27912 | SI:CH211-108C17.2-RELATED-RELATED |
| Ama27913 | ZGC:195170 |
| Ama27914 | |
| Ama27915 | GLUTAMINE-TRNA LIGASE |
| Ama27916 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| Ama27918 | PROLYL-TRNA SYNTHETASE |
| Ama27919 | |
| Ama27921 | |
| Ama27922 | |
| Ama27923 | LEUCINE RICH REPEAT PROTEIN |
| Ama27924 | |
| Ama27925 | ZGC:195170 |
| Ama27927 | |
| Ama27928 | POTASSIUM CHANNEL, SUBFAMILY K |
| Ama27930 | |
| Ama27931 | |
| Ama27935 | |
| Ama27936 | UNCHARACTERIZED |
| Ama27937 | |
| Ama27938 |
