The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
| Gene ID | Description |
|---|---|
| Ama25816 | TELOMERASE-BINDING PROTEIN P23 HSP90 CO-CHAPERONE |
| Ama25817 | |
| Ama25818 | |
| Ama25819 | TRANSPOSON |
| Ama25820 | PIGGYBAC TRANSPOSABLE ELEMENT-DERIVED PROTEIN 4 |
| Ama25821 | LAMIN DM0-RELATED |
| Ama25823 | ANKYRIN REPEAT CONTAINING |
| Ama25824 | DDB1- AND CUL4-ASSOCIATED FACTOR 12-RELATED |
| Ama25826 | UNCHARACTERIZED |
| Ama25827 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
| Ama25828 | PHAGE_INTEGRASE DOMAIN-CONTAINING PROTEIN |
| Ama25829 | TRYPTASE-RELATED |
| Ama25830 | OVOCHYMASE-RELATED |
| Ama25831 | |
| Ama25832 | |
| Ama25833 | POLYAMINE-MODULATED FACTOR 1 |
| Ama25835 | METHIONINE AMINOPEPTIDASE |
| Ama25837 | |
| Ama25838 | |
| Ama25841 | - |
| Ama25842 | |
| Ama25844 | ARGININE/SERINE RICH SPLICING FACTOR SF4/14 |
| Ama25845 | |
| Ama25847 | |
| Ama25848 | SODIUM/POTASSIUM/CALCIUM EXCHANGER |
| Ama25850 | |
| Ama25851 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Ama25852 | |
| Ama25853 | |
| Ama25854 | RAS-ASSOCIATING DOMAIN-CONTAINING PROTEIN |
| Ama25855 | 3'-5' EXONUCLEASE ERI1-RELATED |
| Ama25856 | SODIUM/POTASSIUM/CALCIUM EXCHANGER |
| Ama25857 | |
| Ama25858 | |
| Ama25859 | 15-HYDROXYPROSTAGLANDIN DEHYDROGENASE [NAD(+)] |
| Ama25861 | PUTATIVE-RELATED |
| Ama25862 | PUTATIVE-RELATED |
| Ama25863 | |
| Ama25865 | ACTIN |
| Ama25866 | NEUROTRANSMITTER GATED ION CHANNEL |
| Ama25867 | |
| Ama25868 | |
| Ama25869 | |
| Ama25870 | |
| Ama25871 | MUCOSA ASSOCIATED LYMPHOID TISSUE LYMPHOMA TRANSLOCATION PROTEIN 1/PARACASPASE |
| Ama25873 | |
| Ama25874 | LON PROTEASE |
| Ama25877 | BACULOVIRAL IAP REPEAT-CONTAINING PROTEIN 1 |
| Ama25878 | PROTEIN CBG23764 |
| Ama25879 |
