The Deep-Sea Chemosymbiotic Clam Archivesica marissinica is a species of deep-sea clam in the family Vesicomyidae, commonly found at the Haima cold seep on the northwest continental slope of the South China Sea. This species is well-adapted to extreme environments and relies on symbiotic sulfur-oxidizing bacteria housed in its gills for nutrition. Archivesica marissinica plays a significant role in cold seep ecosystems by contributing to nutrient cycling and supporting diverse microbial and faunal communities.
Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
---|---|---|---|---|---|---|
Archivesica marissinica | Mollusca | Deep-Sea Clam | Hydrothermal vent | 1,361 | Haima cold seep in the South China Sea | 2291877 |
Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
---|---|---|---|---|---|---|---|---|
ASM1484369v1 | 1.5Gb | Chromosome | 2020 | JABXNX01 | Hong Kong Baptist University | PRJNA629898 | 93.50% | 28,949 |
Title | Journal | Pubmed ID |
---|---|---|
Host-Endosymbiont Genome Integration in a Deep-Sea Chemosymbiotic Clam | Molecular Biology and Evolution | 32956455 |
Gene ID | Description |
---|---|
Ama25298 | SERINE/THREONINE-PROTEIN KINASE PLK |
Ama25299 | |
Ama252_5db7b01a | ACTIN-BINDING LIM PROTEIN |
Ama25300 | |
Ama25302 | IGGFC_BINDING DOMAIN-CONTAINING PROTEIN |
Ama25303 | |
Ama25305 | ATP-DEPENDENT RNA HELICASE |
Ama25307 | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING |
Ama25308 | G-PROTEIN COUPLED RECEPTOR |
Ama25310 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
Ama25313 | |
Ama25315 | |
Ama25316 | |
Ama25317 | |
Ama25318 | |
Ama25319 | NAZO FAMILY MEMBER |
Ama25320 | |
Ama25322 | PROTEIN TAG-278-RELATED |
Ama25324 | 4.1 G PROTEIN |
Ama25325 | REVERSE TRANSCRIPTASE DOMAIN-CONTAINING PROTEIN |
Ama25328 | ARRESTIN DOMAIN CONTAINING PROTEIN |
Ama25333 | UNCONVENTIONAL MYOSIN-IXB-LIKE PROTEIN |
Ama25336 | CENTROMERE PROTEIN H |
Ama25337 | MOLYBDOPTERIN SYNTHASE RELATED |
Ama25339 | VOLTAGE-GATED CATION CHANNEL CALCIUM AND SODIUM |
Ama25342 | TRANSPOSABLE ELEMENT-RELATED |
Ama25343 | ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE |
Ama25345 | UNCHARACTERIZED |
Ama25347 | UNCHARACTERIZED |
Ama25354 | AP ENDONUCLEASE |
Ama25355 | TRANSPOSABLE ELEMENT-RELATED |
Ama25356 | |
Ama25362 | UNCHARACTERIZED |
Ama25363 | - |
Ama25367 | - |
Ama25370 | UDP-D-XYLOSE:L-FUCOSE ALPHA-1,3-D-XYLOSYLTRANSFERASE-RELATED |
Ama25371 | INTEGRASE CORE DOMAIN CONTAINING PROTEIN |
Ama25372 | |
Ama25373 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama25374 | CXC DOMAIN-CONTAINING PROTEIN-RELATED |
Ama25375 | COLLAGEN ALPHA |
Ama25376 | THAP DOMAIN PROTEIN |
Ama25377 | UNCHARACTERIZED |
Ama25378 | IL16-RELATED |
Ama25381 | BRAIN PROTEIN I3 |
Ama25382 | NUCLEOTIDE-SUGAR TRANSMEMBRANE TRANSPORTER |
Ama25383 | TETRATRICOPEPTIDE REPEAT PROTEIN 24 |
Ama25385 | |
Ama25388 | RNA POLYMERASE II TRANSCRIPTIONAL COACTIVATOR |
Ama25389 | INHIBITOR OF APOPTOSIS |